Noviherbaspirillum sp. UKPF54: FAY22_19995
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Entry
FAY22_19995 CDS
T06116
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nok03032
]
FAY22_19995
03400 DNA repair and recombination proteins [BR:
nok03400
]
FAY22_19995
Enzymes [BR:
nok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FAY22_19995
DNA replication proteins [BR:
nok03032
]
Prokaryotic type
DNA Topoisomerases
FAY22_19995
DNA repair and recombination proteins [BR:
nok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FAY22_19995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Ribosomal_L40e
DUF1690
Motif
Other DBs
NCBI-ProteinID:
QDZ30043
UniProt:
A0A5B8NB27
LinkDB
All DBs
Position
4331940..4333064
Genome browser
AA seq
374 aa
AA seq
DB search
MKQHAITETPAHAARAAPAAARQAGLRYVNDARPGITREPAGNGFRYRDTEGRLIRDEET
LTRIRSLAIPPAWTEVWISPWDNGHIQATGRDARRRKQYRYHPRWRSVRDEAKYERMLNF
GRILPTVRAHVDQDLRLPGLPREKVLATIVYLLEATMMRIGNEEYARQNKSFGLTTLRDR
HVRIDGGEVAFQFRGKSGVRHTIAVDDPRLARIVRRMRDLPGQELFQYIDDEGMQRTVDS
ADVNDYLRTLTGEDYTAKDFRTWSGTVLAALALQEYEKFDSQAQAKKNIVRAIEAVAEKL
GNTPSICRKCYVHPAVIESYLDGTMLQALRQRAQEKLQNELHALRAEEAAVLALLQERLQ
QQANPRRSAIPQHH
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaacacgccatcaccgaaactcccgcacatgccgcgcgcgccgcaccggcggct
gcccgccaggctggattgcgctatgtgaacgacgcgcggcccggtattacgcgcgaacct
gccggaaacgggtttcgctatcgcgataccgagggccgcttgattcgcgatgaggaaacg
ctgacacgcatcaggtcgcttgccattcccccggcctggaccgaggtctggatttctcct
tgggacaatggccatatccaggcaaccgggcgcgatgcgcggcgccgcaagcagtatcgt
tatcacccgcgttggcgcagcgtgcgcgatgaagcgaaatacgagcgcatgctcaacttc
ggccggatcctgcccaccgtccgcgcgcacgttgaccaggacttgcgtttgccggggttg
ccgcgcgaaaaagtattggccaccatcgtctatctgctggaagcgaccatgatgcgcatt
gggaacgaagaatatgcgcggcagaacaagtcgtttggcctgaccactctgcgtgaccgc
catgtgcgtatcgacggtggcgaagttgccttccaattccgcggcaagagtggtgtgcgt
cacacgattgcggtcgatgacccgcgcctggcgcgcatcgtgcgccgcatgcgcgatttg
ccggggcaggaattgttccagtacatcgacgacgagggcatgcagcgtacagtcgattcg
gccgatgtcaacgattacctgcgcacgctcaccggcgaagactatacggccaaggatttc
cgcacctggtcgggcacggtgctggccgcgctcgcgctgcaggaatatgaaaaattcgat
tcacaggcgcaggccaagaaaaatatcgtccgcgcaatcgaagccgtcgccgaaaagctt
ggcaacacgcccagcatttgccgcaagtgctatgtgcatcccgccgtgatcgaatcctat
ctcgacggcaccatgctgcaggcattgcggcagcgagcgcaggaaaaactacaaaacgag
ttgcatgcattgcgcgcggaagaagcggcggttctggccttgctgcaagagagactgcag
caacaggctaacccgcgcagaagtgccataccgcagcatcactga
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