Noviherbaspirillum sp. UKPF54: FAY22_21625
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Entry
FAY22_21625 CDS
T06116
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok03420
Nucleotide excision repair
nok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FAY22_21625
03430 Mismatch repair
FAY22_21625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nok03400
]
FAY22_21625
Enzymes [BR:
nok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FAY22_21625
DNA repair and recombination proteins [BR:
nok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAY22_21625
MMR (mismatch excision repair)
Other MMR factors
FAY22_21625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
DUF8203
Motif
Other DBs
NCBI-ProteinID:
QDZ30326
LinkDB
All DBs
Position
4668815..4671103
Genome browser
AA seq
762 aa
AA seq
DB search
MQNLLHNLNPEQLAAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTF
TNKAAKEMTARLGAMLPINTRGMWIGTFHGLCNRLLRAHYRDAGLPQTFQILDSQDQLSA
IKRLLKSLNVDDEKYPPRNLMYFINNAKEHGLRAHDVEANDDYNRKFVELYAAYDNQCQR
EGVVDFAELLLRTYDLLTRNQPLREHYQARFKHILVDEFQDTNDLQYKWLKLMAGAHNAV
FAVGDDDQSIYAFRGANVGNMVAFEREFRVQNLIKLEQNYRSHGHILDAANTLIANNSKR
LGKNLRTDAGHGEPVRVYEASSDIQEAQWIIEEAKSLINEGAARSEIAILYRSNAQSRVI
EHALFTAGIPYRVYGGQRFFERAEIKHAIAYLQLMDNPHNDSAFLRVVNFPTRGIGARSI
EQLQDAARQYGISLYAAVPYVAGKAGSSLGGFVKLVEAMRFETQNLPLQEMVKVMLDMSG
LIPHYQNEKEGADRIENLEQLVSAAMLFVSEEGFGIDAPAFLGPKGQPVAGEALTTADGV
EVLDADAPLPTVMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGL
EEGLFPHENSAQEEGGLEEERRLMYVAITRAKKRLYLSFSQTRMLHGQTRYNMKSRFFDE
LPEETLKWLSPRVQPQWFGHRKSAWDEAPEAGANKIAQNFARKDAGWRIGETVMHQKFGE
GVIVNIEGGGTNMRAHINFGKHGMKLLDLGIAKLEKVAQRLN
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacctcctccacaacctcaatcccgaacaactcgccgccgtcaccttgcctgcg
caatcggcgctgatcctggccggcgccggctccggaaaaacccgcgtgctgaccacgcgc
atcgcctggctgatccagaccgggcaggtgtctccggccggtatactcgcggtgaccttt
accaacaaggcggcaaaggaaatgacggcacgcctgggcgcgatgttgccgatcaataca
cgggggatgtggatcggcacctttcacggcttgtgcaaccgcctgctgcgcgcgcactac
cgcgacgccggcttgccgcagacgttccagatcctcgattcccaggaccagctgtcggcg
atcaaacgcttattgaagtcactgaacgtcgacgatgagaaatacccgccgcgcaacctg
atgtacttcatcaacaatgcgaaggagcatggcttgcgcgcgcacgacgtggaagccaac
gacgactacaaccgtaagttcgtcgaactgtacgccgcctacgacaaccagtgccagcgc
gagggcgtggtcgatttcgcggaattgctgctgcgcacctatgatttgctgacgcgcaac
cagccgctgcgcgagcattaccaggcgcgcttcaagcacatcctggtcgacgagttccag
gacaccaacgatctgcagtacaaatggctcaagctgatggccggggcgcacaacgcggtg
ttcgcggtcggcgacgacgaccagagcatttacgcgttccgcggtgcgaacgtgggcaac
atggtcgcgttcgagcgcgaattccgcgtgcagaacctgatcaagctggagcagaactat
cgctcgcacggccacatcctcgacgccgccaacacgctgatcgcgaataacagcaagcgc
ctcggcaagaacctgcgcaccgacgccggccacggcgaaccggtgcgcgtgtacgaggcc
agcagcgatatccaggaagcgcagtggatcatcgaggaagcgaagagcctgatcaacgaa
ggggcggcgcgcagcgagatcgcgatcctgtaccgctcgaatgcgcagtcgcgcgtgatc
gagcacgcgctgttcaccgccggcattccgtaccgcgtctatggcgggcagcgcttcttc
gagcgcgccgaaatcaagcatgcgatcgcctacctgcaattgatggacaacccgcacaac
gattcggcctttttgcgcgtggtgaatttcccgacgcgcggcatcggcgcgcgctcgatc
gagcagttgcaggatgcggcgcgccagtacggcatttcgctgtatgccgcggttccgtac
gtggccggcaaggcggggagctcattgggcggtttcgtgaagctggtcgaggccatgcgc
ttcgagacgcagaacctgccgctgcaggaaatggtgaaggtgatgctcgacatgagtggc
ctgatcccgcactaccagaacgagaaggaaggcgcggaccgcatcgagaacctggaacag
ctggtgagcgcggcgatgctgttcgtgtcggaagaaggcttcggcatcgacgcgccggcc
ttcctggggccgaaaggccagccggtggccggcgaggcgctcaccaccgccgacggcgtc
gaagtgctcgacgccgatgcgcccttgccgacggtgatgtcgccgctgtcggccttcctg
tcgcacgcgtcgctggaagcgggcgacaaccaggcgcaggccgggcaggatgcgctgcag
ctgatgacggtgcactcggccaagggcctggaattcgacgcggtattcatcaccggtctc
gaagaaggtttgttcccgcatgaaaacagcgcgcaggaagagggcgggctggaagaggag
cggcgcctgatgtacgtggcgatcacgcgcgccaagaagcgcctgtacctgagcttttcg
cagacccgcatgctgcacgggcagacgcgctacaacatgaagtcgcgctttttcgacgaa
ctgccggaggaaacgctgaaatggctgtcgccgcgcgtgcagccgcagtggttcggtcac
cggaaatcggcgtgggacgaggcgccggaagcgggcgccaacaagatcgcgcaaaatttt
gcccgcaaggatgccggctggcgcatcggcgaaaccgtcatgcaccagaagttcggcgag
ggcgtgatcgtcaacatcgaaggcggcggcacgaacatgcgggcgcatatcaatttcggc
aagcacggcatgaagctgctggatctcggcattgccaagctggaaaaagtggcgcagcgc
ctgaattga
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