Novosphingobium olei: NSDW_03420
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Entry
NSDW_03420 CDS
T09939
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nol
Novosphingobium olei
Brite
KEGG Orthology (KO) [BR:
nol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NSDW_03420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nol03019
]
NSDW_03420
03009 Ribosome biogenesis [BR:
nol03009
]
NSDW_03420
04131 Membrane trafficking [BR:
nol04131
]
NSDW_03420
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nol04147
]
NSDW_03420
Messenger RNA biogenesis [BR:
nol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NSDW_03420
Ribosome biogenesis [BR:
nol03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NSDW_03420
Membrane trafficking [BR:
nol04131
]
SNARE
SNARE associated proteins
Others
NSDW_03420
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NSDW_03420
Exosome [BR:
nol04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NSDW_03420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_5
AAA_33
AAA_22
AAA_2
AAA_14
TIP49
nSTAND3
IstB_IS21
AAA_28
RNA_helicase
AAA_7
NPHP3_N
AAA_18
ABC_tran
AAA_3
Mg_chelatase
DUF815
Sigma54_activat
AAA_24
AAA_17
TsaE
Zeta_toxin
AAA_30
AAA_11
Parvo_NS1
AAA_lid_PRS2_C
NB-ARC
bpMoxR
PhoH
ATPase
Motif
Other DBs
NCBI-ProteinID:
BEU99247
LinkDB
All DBs
Position
348920..351232
Genome browser
AA seq
770 aa
AA seq
DB search
MADAATIPDSRVVRLQVAGSRQEESGHGIARISRAVMGQLGVTEGDVIEIVGKRSTAARA
VLPYPEDEGLQLIRLDGLQRANADVGSGEHVEVRKADSRPAQRVVFAPAQRDLRLQGPAA
ALKRNFAGRPLVTGDLVATAGQQQVNRGDMPPQLRQMLNAPAFALTQIRLTVVSTVPKGV
VHIDENTEVELRAEYEEPRSSRADVNYDDVGGMTDTIRQLREMVELPLRYPELFTRLGVE
PPKGVLLHGPPGTGKTRLARAVANESDASFFTINGPEIMGSAYGESEKHLREVFEEATKN
APSIIFIDEIDSIAPKRSQVQGEAEKRLVAQLLTLMDGLQARSNLVVIAATNRPDAVDEA
LRRPGRFDREIVVGVPDESGRREILGIHTRGMPLDEDVDLKELARTTHGFVGADLAALAR
EAAIEAVRRIMPKLDFEQQTIPQDVLDSLRVDRDDFLQALKRVQPSAMREVMVQAPTIGW
SDVGGLDDAQEKLREGVELPLKNPEAFHRLGIRPAKGFLLYGPPGTGKTLLAKAVAKEAE
ANFIAIKSSDLLSKWYGESEQQIARLFARARQVAPCVVFIDEIDSLVPARGTGVGEPQVT
ARVVNTILAEMDGLEELQSVVLIGATNRPNLVDPALLRPGRFDELVYVGTPSAEGREHIL
RIHTANMPLGADVNLADVAKKTERFTGADLEDVVRRAGLNAIRRAGGEVQQVIGVDFAEA
LEDSRATVTEDMEAEYGRMKGELKKRAMEPSPIGFLSPGMVQPIRETKHG
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcggcaaccatccccgacagcagggtcgtgcggcttcaggtcgcaggctcg
cggcaggaagaaagcggccacggcatcgcgcggatcagccgcgcggtgatgggccagctc
ggcgtgaccgagggcgacgtcatcgagatcgtcggcaagcgcagcacggcggcgcgcgcg
gtgctgccctatcccgaggacgaagggctccaactgatccgcctcgacgggttgcagcgc
gccaatgccgatgtcggttcgggcgaacatgtcgaagtgcgcaaggcggacagccgcccg
gcgcagcgcgtggtgttcgccccggcgcagcgcgacttgcgcctgcagggcccggcggcg
gcgctgaagcgcaactttgccggtcgtccgctggtgacgggcgatctcgtcgccacggcc
gggcagcagcaggtcaatcgcggcgacatgccgccgcagctgcgccagatgctgaacgcg
ccggccttcgctttgacccagatccgtctgacggtggtgtcgaccgtgcccaagggcgtg
gtccacatcgacgagaacaccgaagtcgaactgcgcgccgagtacgaagagccgcgttcg
agccgcgccgacgtcaattacgacgacgtgggcggcatgaccgacaccatccgccagctg
cgcgagatggtcgaactgccgctgcgctatcccgaactgttcacgcgcctgggcgtcgag
ccgcccaagggcgtgctgctgcatggcccgccgggaaccggcaagacgcggctggcgcgt
gccgtcgccaacgaaagcgatgcatcgttcttcaccatcaatgggcccgagatcatgggc
tcggcctatggcgagagcgagaagcacctgcgcgaagtgttcgaggaggcgaccaagaac
gccccttcgatcatcttcatcgatgagatcgattcgatcgcgcccaagcgcagccaggtg
cagggcgaggcggaaaagcgcctcgtcgcgcagttgctgacgctgatggacggcctgcag
gcgcggtccaacctggtggtgatcgcggcgaccaatcggcccgacgcggtcgacgaggcg
ctgcgccggccgggccggttcgaccgcgagatcgtggtcggcgtgcccgacgaaagcggg
cggcgcgagatcctgggcattcacacccgcggcatgccgctggacgaggatgtcgacctc
aaggaactcgcccggacgacgcacggcttcgtcggcgccgaccttgccgcgctggcgcgc
gaggcggcgatcgaggccgtgcgtcggatcatgcccaagctcgatttcgagcagcagacg
atcccgcaggacgtgctggacagcttgcgcgttgaccgcgacgacttcctgcaggcgttg
aagcgcgtacagccttcggcgatgcgcgaagtcatggtgcaggcgccgacgatcggctgg
tccgatgtcggcggtctggacgacgcgcaggagaagttgcgcgaaggcgtcgagctgccg
ctcaagaaccccgaggcgttccaccggctcggcatccggccggccaagggcttcctgctc
tatggcccgccgggaaccggcaagacgctgctggccaaggcggttgccaaggaggccgag
gcgaacttcatcgccatcaagtcgagcgacttgctgtccaagtggtatggcgagagcgag
cagcagatcgcgcggctgttcgcccgcgcccggcaggtcgcgccgtgcgtggtgttcatc
gacgagatcgacagcctggtgcccgcgcgcgggaccggggtgggcgaaccgcaggtgacg
gcgcgcgtggtcaacaccatccttgccgaaatggatggccttgaagaactgcagtcggtg
gtgctgatcggtgcgaccaaccggccgaacctggtcgatccggcgctgttgcgcccgggc
cggttcgacgagctggtctatgtcggcacgccgagcgcggaagggcgcgagcacatcctg
cgcatccacaccgcgaacatgccgctgggcgcggacgtcaatctggcagacgtggcgaag
aagaccgagcgcttcaccggcgccgatctggaggacgtggtgcgccgggccggcctcaac
gccatccgtcgcgccggcggcgaagtgcagcaggtgatcggagtagactttgccgaggcg
ctcgaggattcgcgcgcgacggtgaccgaggacatggaagccgaatacggccggatgaag
ggcgagctcaagaagcgcgcgatggagcccagtccgatcgggttcctcagccccggcatg
gtccagccgatccgcgaaaccaagcacgggtaa
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