Novosphingobium olei: NSDW_05210
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Entry
NSDW_05210 CDS
T09939
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
nol
Novosphingobium olei
Brite
KEGG Orthology (KO) [BR:
nol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nol03000
]
NSDW_05210 (rtcR)
Transcription factors [BR:
nol03000
]
Prokaryotic type
Other transcription factors
Others
NSDW_05210 (rtcR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
Mg_chelatase
AAA_5
AAA
AAA_16
ATPase_2
MCM
AAA_22
AAA_14
DUF6213
AAA_19
AAA_7
AAA_33
AAA_30
NACHT
AAA_2
TsaE
AAA_18
T2SSE
RsgA_GTPase
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BEU99426
LinkDB
All DBs
Position
complement(549848..551446)
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AA seq
532 aa
AA seq
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MKPTTVISFLGSTLDASKFGPSRWMKWRPSVGLCMHEDLRVDRFLMIHGSAHSRLAEYVS
EDIASVSPETMVERHVIDFGDAWDFEEVYGKLLDFARSQPLDPDVEDYLIHITTGTHVAQ
ICLFLLTEAHYLPGRLLQTQPRRGAPDAAGTWSVIDLDLSRYDSIATRFASESAESTSFL
KSGIETRNAAFNTMIDEIEQVASRTRAPILLMGPTGAGKSQLARRIFELKKLKRQVSGQF
VEVNCATLRGDSAMSALFGHKKGAFTGAAGDRPGLLRTADGGLLFLDEIGELGLDEQAMI
LRAIEDKRFLPVGADREAESEFQLIAGTNRDLARCVSDGTFREDLFARLNLWTFSLPGLS
ARREDIAPNLDYELDRHAQREGERVTFNKEARERYLAFAMSAEAQWQGNFRDLAASVTRM
ATFSPKGRIDSEVVATEITRLRRLWSGSTSIASKDNVISELLGENALANIDPFDRVQLAH
VLETCRASRSLSEAGRTLFAASRTKRSSTNDADRLRKYLARFGVTWDMLGGG
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaaccaccgtcatcagttttctcggctcaacgctcgatgcttccaagttcggc
ccatcgcgctggatgaaatggcggccatcggtaggcctgtgcatgcacgaggacctgcgg
gtcgatcggttcctgatgatccacggctcggcgcacagccgcctggccgagtatgtcagc
gaggacatcgcctcggtttcgcccgaaacgatggtcgagcgccacgtgatcgactttggc
gacgcctgggacttcgaagaggtttacggcaagctactcgatttcgcgcgttcccaaccg
ctcgacccggatgtcgaggactacctgatccacatcaccaccggcacccacgtggcgcag
atctgcctgttcctgctgaccgaggcgcattacctgcccggccgcctgctccagacccaa
cccaggcgtggcgcgcctgatgcggcgggaacctggagcgtgatcgatctcgatctgtcg
cgctacgacagcatcgccacacgcttcgccagcgagagcgcggaaagcacgtcgttcctc
aagtctggcatcgaaacgcgcaatgctgcgttcaacacgatgatcgacgagatcgaacag
gtcgccagtcgcactcgcgccccgatcctgctgatgggtccgaccggcgcaggtaagagc
cagctcgcccggcgcatcttcgagctgaagaagctcaagcggcaggtgagcggccagttc
gtcgaagtgaactgcgctaccctgcgcggtgacagcgcaatgtccgctctgtttgggcac
aagaagggtgctttcacaggtgctgcgggtgatcgccctggcctgctgcgcaccgctgat
ggcggccttctgttcctcgacgagatcggcgagctcgggctcgatgagcaagcgatgatc
ttgcgtgctatagaggacaagcgcttcctgcccgtcggcgccgaccgcgaagcagaaagc
gagttccagctcatcgcggggaccaaccgcgatcttgctcgatgcgtctcggacggcaca
ttccgagaagatctctttgcccggcttaatctttggactttttcgctccctggcttgtcg
gcgcggcgcgaagacattgccccgaaccttgattatgaacttgatcggcacgcccagcga
gagggtgagcgtgtcaccttcaacaaggaagcgcgcgagcgctaccttgcttttgctatg
tcagccgaagcgcaatggcagggaaacttccgcgatctcgctgccagcgttacgcggatg
gcgaccttctcacccaaggggcggatcgacagcgaagtcgtcgcaaccgagatcacacgg
ttgcgacgactctggtcaggcagcacttcaatcgcctcgaaggacaacgtcatttcggaa
ctcctcggcgagaatgcgttggccaatatcgacccgttcgaccgcgtacagcttgctcat
gtccttgagacatgccgcgccagccgctcgctttctgaggctggccgcacgctgtttgct
gcctcccgcacgaaacgttctagtaccaatgatgctgaccggctgcgtaagtatctcgcg
cgatttggtgttacgtgggacatgttgggaggcggctga
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