Novosphingobium olei: NSDW_13440
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Entry
NSDW_13440 CDS
T09939
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nol
Novosphingobium olei
Pathway
nol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NSDW_13440 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nol03019
]
NSDW_13440 (pnp)
03016 Transfer RNA biogenesis [BR:
nol03016
]
NSDW_13440 (pnp)
Enzymes [BR:
nol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NSDW_13440 (pnp)
Messenger RNA biogenesis [BR:
nol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NSDW_13440 (pnp)
Transfer RNA biogenesis [BR:
nol03016
]
Prokaryotic type
tRNA degradation factors
NSDW_13440 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
OB_PDCD11
S1_2
Motif
Other DBs
NCBI-ProteinID:
BEV00250
LinkDB
All DBs
Position
1419763..1422090
Genome browser
AA seq
775 aa
AA seq
DB search
MFDVKTVSLEWGGKTLTLETGRIARQADGAVIATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSY
DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFVDGEYVLNPKQDVALADGRLDLVV
AATDTAVMMVESEAKELSEDEMLGAVMFAHDEIRKVIGAIIQLAEKAAKDPWEIDLSDNT
ADIKKKLKDLVGADVAAAYKLTDKSARSNALNEARAKAKAAFAEDGAQTQMVAIKTMKKV
EADIVRGAILKDGQRIDGRTTTQVRPIEAIVGFLPRTHGSALFTRGETQAICTTTLGTKD
AEQMIDGLEGLRYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKEE
FPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAVLSD
ILGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITREIFEVALRQASEGRAHILGEMTKA
LGEARTELSAHAPRIETLQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISSS
DLGQIEAAKNWILGIVEEAEVGKIYDGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVE
KPTDVVKEGQAVKVKVLEIDNRGKVRLSMRVVDQETGAELEDTRPPREPREPRGDRGDRG
GDRRGPGGRGGDRGGRGDRGPRRDGGEGRGDRGPRRDREDGPAPDHMPAFLKSDD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtcaaaaccgtatcgctggagtggggcggaaagaccctcaccctcgaaacc
ggccgcattgcccgtcaggctgacggcgcggtcatcgccacctacggtgaaaccgtggtg
ctctgcgcggtcacggccgccaagtcggtcaaggaaggccaggacttcttccccctgacc
gtccactaccaggaaaagtattcggcagccggccgcatccccggcggcttcttcaagcgc
gaacgcggtgccacggaaaaggaaacgctggtttcccgcctgatcgaccgtccggtccgt
ccgctgttcccggaaggcttctataacgaaattaacgtcatcgcccaggtgctgagctat
gatggcgagaccgaacccgatatcgtcgcgatgattgccgcttcggctgcgctgaccatc
tcgggcgtgccgttcatgggcccgatcggcgctgcgcgcgtcggcttcgtcgatggcgaa
tatgtcctgaacccgaagcaggacgtggctctggccgacggtcgtctcgacctcgtcgtt
gccgcaaccgacaccgccgtgatgatggtggaatcggaagccaaggaactgagcgaagac
gagatgctcggcgccgtgatgttcgcgcatgacgagatccgcaaggtcatcggtgcgatc
atccagctggccgagaaggccgccaaggatccttgggaaatcgacctgtcggacaacacc
gccgacatcaagaagaagctcaaggacctcgtcggtgccgacgtcgccgctgcctacaag
ctgaccgacaagtcggcgcgctccaacgctctgaacgaagcccgcgccaaggccaaggcc
gcgttcgccgaggacggcgcgcagacccagatggtcgcgatcaagacgatgaagaaggtg
gaagccgacatcgtccgtggcgcgatcctgaaggacgggcagcgcatcgacggccgcacc
accacgcaggtccgcccgatcgaagcgatcgtcggcttcctgccgcgcacccatggttcg
gcgctgttcacccgcggtgaaacgcaggcgatctgcacgaccacgctgggcaccaaggac
gccgagcagatgatcgacggcctcgaaggcctgcgctacgaaaacttcatgctccactac
aacttcccgccgtactcggtgggcgaagtcggtcgcttcggtgctccgggccgtcgcgaa
gtgggccatggcaagctggcatggcgcgcgctgcacccggtgctgccgaccaaggaagag
ttcccctatacgatccgcatcctctcggacatcaccgagtcgaacggttcgtcctcgatg
gcgaccgtctgcggcggctgcctctcgatgatggacgcgggcgttccggtgaagcgtccg
gtttcgggcatcgccatgggcctgatcctggaaggtgacaagttcgccgttctctcggac
atcctgggcgacgaggatcacctcggcgacatggacttcaaggtggctggcacctctgaa
ggcatcaccacgatgcagatggacatcaaggtcgcgggcatcacgcgcgagatcttcgaa
gtcgccctgcgtcaggcttcggaaggccgtgcgcacatcctgggcgagatgaccaaggcg
ctgggcgaagcgcgcaccgaactttcggcgcacgctccgcgcatcgagacgctgcagatc
gacaagtcgaagatccgcgacgtgatcggcaccggcggcaaggtgatccgcgagatcgtc
gccaccaccggcgcgaaggtcgacatcgacgacgaaggcctgatcaagatcagctcgtcg
gatctcggtcagatcgaagcggccaaaaactggatactcggcatcgtcgaggaagcggaa
gtcggcaagatctacgacggcaaggtcgtcaacatcgtcgacttcggcgctttcgtgaac
ttcatgggcggcaaggacggtctcgtccacgtcagcgaaatgaagaacgagcgcgtggaa
aagccgacggatgtcgtcaaagaaggccaggccgtgaaggtcaaggtcctcgagatcgac
aaccgcggcaaggttcgcctgtcgatgcgcgtcgtcgaccaggaaaccggcgccgaactg
gaagatacccgtccgccccgcgaaccgcgtgaaccgcgcggcgaccgtggtgatcgtggc
ggtgaccgtcgtggtccgggcggccgcggtggcgaccgcggcggtcgcggtgatcgtggt
ccgcgtcgtgacggcggcgaaggccgtggcgatcgcggcccgcgccgtgaccgcgaagac
ggtccggccccggatcacatgccggcattcctcaagtcggacgattga
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