Novosphingobium olei: NSDW_19320
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Entry
NSDW_19320 CDS
T09939
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nol
Novosphingobium olei
Pathway
nol02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nol00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NSDW_19320 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nol03021
]
NSDW_19320 (rpoD)
Transcription machinery [BR:
nol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NSDW_19320 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
Disulph_isomer
Motif
Other DBs
NCBI-ProteinID:
BEV00838
LinkDB
All DBs
Position
2073943..2075946
Genome browser
AA seq
667 aa
AA seq
DB search
MASNEKTDSGDAPLIDLNDASIKKLIARAKRRGIITYDELNEALPQDQMSSEQIEDIMAA
ISEMGVNIVESDEDAVDPEDKAQDEEIDESEAVDDRPDIVKRKETVERTDDPVRMYLREM
GAVELLSREGEIAIAKRIEAGRDTMIMGLCESPITFHAIIQWSEALNAGEMQLREILDLD
AMLSKEPQPENLSEDGEEADGEISEATAGPTFKEEEDVEEEESADDEDDELRERRARPAE
EEEEDNTLSLAQMEAQLKPAALEKFAEITGLFRAFEKLQAERLDALGLGNAFPAAKEAQY
HKLREELTAQVESVQFHATKIEYLVDNLYAFNRRLTTLGGQMLRLAERHKVSRKDFLDLY
VGHELDEGWLQQHAKRDKKWAAFAANEASAVERIRAEISDIASATGMSLGEFRRIVNMVQ
KGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAER
LSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTR
VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRK
MRSFLDQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaacgaaaagaccgatagcggcgatgccccgctgatcgacctcaacgatgct
tcgatcaagaagctgatcgcacgcgcaaagcgtcgcggcatcatcacctatgacgaactg
aacgaggccctgccgcaggaccagatgtcttccgagcagatcgaggacatcatggccgcg
atctcggaaatgggcgtcaacatcgtcgagagcgacgaagatgccgtcgatcctgaagac
aaggctcaggacgaagagatcgacgagagcgaagcggtcgacgatcgccccgatatcgtc
aagcgcaaggaaaccgtcgagcgcaccgacgatccggtgcgcatgtatctgcgcgaaatg
ggcgcggtcgaactgctcagccgcgaaggcgaaatcgccatcgccaagcgcatcgaagcg
ggccgcgacaccatgatcatgggcctgtgcgaaagcccgatcaccttccacgcgatcatc
cagtggtccgaagcgctcaacgcgggcgagatgcagctgcgcgagatcctcgatctcgac
gcgatgctgtcgaaggagccgcagcccgaaaacctctccgaagatggcgaggaagccgac
ggcgagatcagcgaagccaccgccggccccaccttcaaggaagaagaggacgtcgaggag
gaggaatccgccgacgacgaggacgatgaactgcgcgaacgccgcgcgcgtccggccgag
gaagaggaagaggacaacactctcagcctcgcccagatggaagcgcagctgaagcctgcc
gcgctcgaaaagtttgccgagatcaccggcctgttccgcgccttcgaaaagctccaggcc
gagcggctcgatgcgctgggtcttggcaatgccttcccggcggccaaggaagcacagtat
cacaagctgcgcgaagagctcaccgcgcaggtcgaatccgtgcagttccacgcgaccaag
atcgaatacctggtcgacaacctctatgcgttcaaccgtcgcctgacgacgcttggcggc
cagatgctgcgccttgccgaacgccacaaggtttcgcgcaaggacttcctcgacctttac
gtcgggcacgagctcgacgaaggctggctgcagcagcacgccaagcgcgacaagaagtgg
gccgccttcgccgccaacgaagcgagcgcggtcgaacgcattcgtgcagagatttccgac
atcgccagcgccaccggcatgtcgctcggtgaattccgccgcatcgtgaacatggtccag
aagggcgagcgcgaggcgcgcatcgccaagaaggaaatggtcgaggcgaacctgcgcctc
gtgatctcgatcgccaagaagtacaccaaccgcggcctgcagttcctcgacctgatccaa
gaaggcaacatcggcctgatgaaggcggtcgacaagttcgaataccgccgcggttacaag
ttcagcacctatgccacgtggtggatcaggcaggcgatcacccgttcgatcgccgaccag
gcgcgcaccatccgcatcccggtccacatgatcgaaacgatcaacaagctggtccgcacc
agccgccagttcctgcacgagcagggccgcgagcccacgcccgaggaaatggccgagcgt
ctgtcgatgccgctcgaaaaggtgcgcaaggtgatgaagatcgccaaggaaccgatctcc
ctcgaaacgccgatcggcgacgaggaagattcgcacctgggcgatttcatcgaggacaag
aacgcgatcatcccggtcgacgcggcgatccaggcgaatctcaaggaaacggtcacccgc
gtccttgccagcctcaccccgcgcgaagaacgcgtgctgcgcatgcgtttcggcatcggc
atgaacaccgaccacacgctcgaggaagtcggccagcagttctcggtcacccgtgaacgc
atccgccagatcgaggccaaggcgctgcgcaagctcaagcacccgagccgcagccgcaag
atgcgctcgttcctcgatcagtaa
DBGET
integrated database retrieval system
