Novosphingobium olei: NSDW_33980
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Entry
NSDW_33980 CDS
T09939
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nol
Novosphingobium olei
Pathway
nol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NSDW_33980 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nol03021
]
NSDW_33980 (rpoC)
03400 DNA repair and recombination proteins [BR:
nol03400
]
NSDW_33980 (rpoC)
Enzymes [BR:
nol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NSDW_33980 (rpoC)
Transcription machinery [BR:
nol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NSDW_33980 (rpoC)
DNA repair and recombination proteins [BR:
nol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NSDW_33980 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BEV02304
LinkDB
All DBs
Position
complement(3636578..3640864)
Genome browser
AA seq
1428 aa
AA seq
DB search
MNDLTKFTNQLAKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVIEPGITPLERYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLIDLDLEQERKDLMEELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLDRSGEPGEGMMLADMAEVHQALHA
GAVTMHSKIVARVPQTDENGQQYLKRFETTPGRMLIGECLPKSHKVPFEVVNKVLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRNAFKAGISFGKDDMIIPDSKDALVNETKELV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAAAMMDEIKASPVDPETGRQKPINSIYM
MSHSGARGSPTQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVTIDDCGTERALEMRAIVQGGSTIASLGERILGRTL
AEDLIEAKTGVVICPKGTLLDEAAIVRIEAAGVQSARIRSPLICEAQQGVCGTCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSNLEAICDGTVEYRDIPT
IIDSRGRRLSLARNGEIAVIDTEGRERAMHRVPYGTHLLHENGATIAQGDRLAEWDPFTL
PVITEKPGIVRYQDLIDGRTLTEQVDDATGIAQRVVTENRAGGRAKKEDLRPRLTLLDEN
SGEAARYMMAPGTTLSVEDGQEVKAGDVLARASREAAKTRDITGGLPRVAELFEARIPKD
NAIIAKISGRIEFVRDYKAKRKIAIIPEEGEPVEYLIPKSKVIDVQEGDWVKKGDNLISG
SPNPHDILEVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTT
LLPGEQVDVEEMNEINGKLEAGLRPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTQ
AAVEGKKDSLIGLKENVIVGRLIPAGTGAGMNRMRVAATSRDAALRASYRKLQESLIAPA
TAAEEHAAELAQGPEAAIGDDPLAVIEGETHGTDADAGDYLIQGDDEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccttaccaagttcaccaaccagctcgccaagcccgagaccttcgaccagatc
cagatcggtctggcgagccccgagcgcatccgcagctggtccttcggcgagatcaagaag
ccggaaaccatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccggtgaaggactacgaatgcctgtgcggcaaatacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcaccgtcaccaaggtgcgccgcgag
cgcatgggccacatcgaactggccgcgccggtcgcgcacatctggttcctcaagtcgctg
ccttcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgcatcctctac
ttcgaaagctacgtggtcatcgagccgggcatcaccccgctcgaacgctaccagttgctg
accgaggacgaactgctcgacgcgcaggacgaatacggcgaagacgcgttcagcgccggc
atcggcgccgaagcggtcaagcagatgctgatcgatctcgacctcgaacaggaacgcaag
gacctgatggaggagctcgccaccaccaagagcgagctgaagcccaagaagatcatcaag
cgcctcaaggtcgtcgaatcgttcatcgattcgggcaatcgtccggaatggatgatcctc
gacgtcgtgccggtcatcccgcccgaactgcgcccgctggtgccgctagatggtggccgc
ttcgcgacctcggacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctc
aagcgcctgatcgagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgttgacgcgctgttcgacaacggccgccgcggccgtgtcatcaccggtgcc
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccc
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgtctcgatgccaagggtctgtcgatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatccttgacgaggtgatccgcgaacac
ccggttatgctgaaccgtgcgcccacgctgcaccgtctcggcatccaggcgttcgagccc
gtcctgatcgaaggcaaggcgatccagctgcatccgctcgtctgctcggcgttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggtgctgggcctgtactacctctcgctcgatcgttcgggc
gagccgggcgaaggcatgatgctggccgacatggccgaagtgcaccaggcactccacgcc
ggtgcggtgaccatgcactcgaagatcgtggcccgcgtgccgcagaccgacgagaacggt
cagcagtacctcaagcgcttcgagaccacgccgggtcgcatgctgatcggcgaatgcctg
cccaagagccacaaggttcccttcgaggtcgtgaacaaggttctgaccaagaaggaaatc
ggcgacgtcatcgaccaggtctaccgtcacaccggccagaaggacacggtgctgttcgcc
gacgcgatcatggcgctgggcttccgcaacgcattcaaggcgggcatctcgttcggcaag
gacgacatgatcatccccgacagcaaggatgcgctggtcaacgaaaccaaggaactggtt
gccgactacgagcagcagtaccaggacggcctgatcacccagcaggaaaagtacaacaag
gtcatcgacgcctggagccgctgcggcgaccaggtggccgcggccatgatggacgagatc
aaggcctcgccggtcgaccccgaaacgggccgtcagaagccgatcaactcgatctacatg
atgagccactcgggcgcgcgtggttcgccgacgcagatgaagcagcttgccggcatgcgc
ggcctcatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatacttcaactcgacccacggcgcccgcaagggcctcgct
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggactgcgtcgtcaccatcgacgactgcggtaccgagcgagcgctggaaatgcgcgcg
atcgtgcagggcggttcgacgatcgcctcgcttggcgagcgcatcctcggccgtacgctg
gccgaagacctgatcgaggcgaagaccggcgtggtgatctgccccaagggcacgctgctc
gacgaagccgccatcgtccgcatcgaagcggccggcgtccagtcggcgcgcatccgctcg
ccgctgatctgcgaagcccagcagggcgtttgcggcacctgctacggccgcgacctcgcg
cgcggtacgccggtgaacatcggtgaagcggtcggcgtcatcgccgcccagtcgatcggc
gagcccggcacgcagctgaccatgcgtacgttccacatcggtggcgcggcgcaggtcaac
gaacagtcgaacctcgaagcgatctgcgacggtaccgtcgaataccgcgacatcccgacg
atcatcgacagccgcggtcgtcgcctgtcgctcgcccgcaatggcgagatcgcggtgatc
gataccgaaggccgcgaacgcgccatgcaccgcgtgccttacggtacccacctgctgcac
gaaaacggcgccaccatcgcgcagggcgatcgcctggccgaatgggacccgttcaccctg
ccggtgatcaccgaaaagccgggtatcgtccgctatcaggacctgatcgacgggcgcacg
ctcaccgaacaggtcgacgatgcgaccggtatcgcccagcgtgtggtgaccgaaaaccgc
gcaggtggccgcgccaagaaggaagacctgcgtccgcgcctgaccctgctcgacgagaac
tcgggcgaggccgcgcgctacatgatggcgccgggcacgaccctctcggtcgaggacgga
caggaagtgaaggcgggcgacgtgctggcgcgtgccagccgcgaagctgccaagacgcgt
gacatcaccggtggtctgccgcgcgttgccgaactgttcgaagcgcgcatcccgaaggac
aacgcgatcatcgcgaagatctcgggccgcatcgaattcgtccgcgactacaaggccaag
cgcaagatcgcgatcatcccggaagagggtgaaccggtcgagtacctgatcccgaagtcg
aaggtgatcgacgtccaggaaggtgactgggtcaagaagggcgacaacctgatctcgggt
tcgcccaacccgcacgacattctcgaagtcatgggcgtcgaagccctggccgagtacctc
gtcgcggaaatccaggaagtctaccgcttgcagggcgtgaagatcaacgacaagcacatc
gaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgacggtggcgacaccacc
ctgctgccgggcgaacaggtcgacgtcgaggagatgaacgagatcaacggcaagctggaa
gcgggcctgcgcccggccgaaggcaagccggtgctgctcggcatcaccaaggccagcctg
cagacgcgttcgttcatctcggccgcgtcgttccaggaaaccacccgcgtgctcacgcag
gcggccgtggaaggcaagaaggactcactgatcggtctcaaggagaacgtcatcgtcggc
cgtctcatccccgccggcaccggcgcgggcatgaaccggatgcgcgttgccgccaccagc
cgcgatgccgcgctccgcgcgtcctatcgcaagctgcaggaatcgctcatcgcaccggcc
acggctgctgaagagcatgccgccgaactggcgcagggcccggaagcggcgatcggcgac
gatccgctggcggtgatcgagggtgaaacccacggcaccgacgcggacgccggcgactac
ctgatccagggtgacgacgaagcctga
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integrated database retrieval system
