Novosphingobium olei: NSDW_36360
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Entry
NSDW_36360 CDS
T09939
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nol
Novosphingobium olei
Pathway
nol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NSDW_36360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nol03019
]
NSDW_36360
Enzymes [BR:
nol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NSDW_36360
Messenger RNA biogenesis [BR:
nol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NSDW_36360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
NAD_binding_3
Motif
Other DBs
NCBI-ProteinID:
BEV02542
LinkDB
All DBs
Position
3892213..3893682
Genome browser
AA seq
489 aa
AA seq
DB search
MSYFSDLGLAEPILRALETKGYNDPTPIQRQAIPALLEGRDLLGIAQTGTGKTAAFSLPS
LHRLAADPKPRKPASCRMLVLSPTRELAAQIAENIKGYAKNLKLGVDCVFGGVPIGKQAR
RLVQGTDILVATPGRLLDLIDNRALTLGRTEIFVLDEADQMMDLGFIHALKRVANLLPKN
RQSLFFSATMPKSIEDLGKQFIQNPVRVEVAPQSTTAERVEQYVTFLNQAEKQALLSLRI
RAMLADKTLDRALVFTRTKHGADRVVRNLNAAGIDARAIHGNKTQAQRTAALEAFRQGSC
PVLVATDIAARGIDVSGVSHVFNFELPNVAEQYVHRIGRTARAGADGIAISFCAPDEKPY
LRDIEKLTKVKLEQVPLPENFLSEAAKLPSAKRTPEQLAQDARREERDERGRFGDRGERR
GGGGRDGNRDGGRGRPQGQKPAQGGQRSGGDGQRTAAEGERGEAGKPRRFRPRGAPGVGA
HRNKVRRAG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatttttccgatctcggcctcgccgagcctatcctgcgcgcgctcgagaccaag
ggctacaacgatcccacgccgatccagcgccaggccattcccgccctgctcgaagggcgt
gacctgctcggcatcgcgcagaccggcacgggcaagaccgcggcattctcgctgccctcg
ctccaccgcctcgccgccgatcccaagccccgcaagcccgcctcgtgccgcatgctggtg
ctctcgcccacccgcgaactcgccgcgcagatcgccgaaaacatcaagggctatgccaag
aacctgaagctcggcgtcgattgcgtgttcggtggcgtgcccatcggcaagcaggcccgc
cgcctggtgcaggggactgacatcctcgtcgccacgcccggccgcctgctcgacctgatc
gacaaccgcgcgctcaccctcggccgcaccgagatcttcgtgctcgacgaagccgaccag
atgatggacctcggcttcatccacgcgttgaagcgcgtcgccaacctgctgcccaagaac
cgccagtcgctgttcttctcggccaccatgcccaagtcgatcgaagacctcggcaagcag
ttcatccagaaccccgtccgcgtcgaagtcgccccgcagtcgaccacggccgaacgcgtc
gaacagtacgtcaccttcctcaaccaggcggaaaagcaggcgctgctcagcttgcgcatc
cgcgcgatgctggccgacaagacgctcgaccgcgcgctggtgttcacccgcaccaagcat
ggggccgatcgcgtcgtgcgcaacctcaatgccgccggcatcgatgcccgcgccatccac
ggcaacaagacccaggcgcagcgcaccgccgcgctcgaagccttccgccagggctcgtgc
cctgtgctcgtcgccaccgacatcgccgcgcgcggcatcgacgtttcgggcgtgtcccac
gtgttcaacttcgaactgccgaacgtcgccgaacagtacgtccatcgcatcggccgcacc
gcgcgcgccggggccgatggcatcgccatcagcttctgcgcgcccgacgaaaagccctac
ctgcgcgacatcgagaagctgaccaaggtcaagctcgagcaggtgccgctgcccgaaaac
ttcctcagcgaagccgccaagctcccctcggccaagcgcacgcccgaacagctggcgcag
gacgcccgccgcgaagagcgcgacgaacgcggccgcttcggcgatcgtggcgaacgccgc
ggtggtggtggccgcgacgggaatcgcgatggtggccggggtcgtccccagggccagaag
cccgcgcagggcggccagcgctccggcggtgacggccagcgcaccgccgccgaaggcgag
cgcggcgaagccggcaagccccgccgcttccgcccccgcggcgcccccggcgtcggcgcc
caccgcaacaaggtccgccgcgcaggctga
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