Nonlabens sp. MIC269: AAT17_05815
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Entry
AAT17_05815 CDS
T04144
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
nom
Nonlabens sp. MIC269
Pathway
nom02020
Two-component system
nom02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nom00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AAT17_05815
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AAT17_05815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nom03021
]
AAT17_05815
Transcription machinery [BR:
nom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AAT17_05815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
Dam
HTH_12
HTH_IclR
MarR
Motif
Other DBs
NCBI-ProteinID:
ALM20772
LinkDB
All DBs
Position
complement(1219844..1221298)
Genome browser
AA seq
484 aa
AA seq
DB search
MLKQTLNFKLSQKLSPQQIQLMKLIQLPTQAFEQRVKSELEENPALDSGKEKSEDEYDSL
TNDDFDQDNETIEADINVDEYLSDDEIPEYRTQSNNYSADEDEKSVPYAAGKSFTQTLLD
QLNTRRLSDQEASIAQFLVGSIDGSGYIRRSLEDIADDLAFTMNVYTDVDEVEKVLRIVQ
QLDPAGVGARSLQECLLIQLSRKRNSPDTELAIKLIRDSFDAFSKKHYKKLLSKYNVSEE
ELRDAIEEIEHLNPKPGGSYAGGSTKIVEQVVPDFTIRIKDGELELTLNGRNAPELHVSR
DYSNMLKGYKEAKEKTKSQKDAVMFIKQKLDSAKWFIEAIKQRQETLFVTMSSIMHYQKE
YFLTGDERNLRPMILKDIADEIGMDVSTVSRVANSKYVDTPYGTKLIKEFFSESMTNTDG
EEVSTREIKKILETVISEEDKKKPLTDQKLAEILKEKGYPIARRTVAKYREQLDIPVARL
RKEI
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcttaagcaaacactcaattttaaactttctcaaaagctgtctccgcagcaaattcaa
ctcatgaaattgattcaactgcctacacaggcatttgaacaacgagttaaatctgaactt
gaggaaaatcctgcgcttgatagtggtaaggaaaaatcagaagatgagtatgactcactt
actaacgacgattttgatcaagataatgaaaccatcgaggcagatatcaatgttgatgaa
tatttaagcgacgacgagataccagaatatcgtacgcaatctaataactatagtgcggat
gaggacgagaaaagtgttccttatgcagcaggaaaatcatttactcaaacccttcttgat
cagcttaatactaggcgattatccgatcaagaagctagtatcgcgcaatttttagtaggt
agcatagatggtagcggttacatacgtagatcattggaggatattgcagatgacctagcc
tttaccatgaacgtttacaccgatgtagatgaggtagaaaaggtgttgcgtatcgtacaa
cagctagatcctgctggagtaggagcccgtagtttgcaggagtgtttattgattcagctt
tcgcgaaagcgtaattccccagatactgagcttgcaattaaattgattagagacagtttt
gacgctttcagtaagaagcattataaaaaattactttctaaatacaacgtaagtgaggaa
gaattgcgtgatgctattgaagaaatagagcatttaaacccaaaaccaggaggctcatac
gctggcggcagtacaaaaatcgtagagcaagtcgttccagattttacaattagaattaaa
gacggtgagttagaacttactctaaatggccgtaatgctccagagctacacgtgtctaga
gactactctaacatgcttaaaggttataaagaggcaaaggagaagactaagtctcaaaag
gacgctgtgatgttcattaaacaaaagcttgatagtgcaaagtggttcattgaggcaata
aagcaacgacaagaaacactgtttgtaacgatgtctagcattatgcattatcaaaaagaa
tatttccttacaggtgatgaacgtaacttacgtcctatgattttaaaggacatcgccgat
gaaattggtatggacgtttctaccgtgagccgtgtggcaaattcaaagtatgtggacaca
ccttatggaacaaagttgatcaaggaatttttctctgaatccatgactaatacagacgga
gaagaggtttctactagggaaataaagaaaatactagaaactgtaattagtgaagaggat
aagaaaaaacctcttacagatcaaaaattagctgagattcttaaggaaaaaggttatcct
atagccagaagaacggtagctaagtatcgtgaacagttagatattcccgtagcaagattg
cgtaaagagatctaa
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