Nostoc sp. NIES-3756: NOS3756_03110
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Entry
NOS3756_03110 CDS
T04170
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
non
Nostoc sp. NIES-3756
Pathway
non03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
non00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NOS3756_03110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
non03019
]
NOS3756_03110
03400 DNA repair and recombination proteins [BR:
non03400
]
NOS3756_03110
Enzymes [BR:
non01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NOS3756_03110
Messenger RNA biogenesis [BR:
non03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NOS3756_03110
DNA repair and recombination proteins [BR:
non03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NOS3756_03110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
GerE
HTH_24
HTH_38
HTH_5
MarR_2
MarR
HTH_20
DUF6115
Radical_SAM
HTH_7
Motif
Other DBs
NCBI-ProteinID:
BAT51388
LinkDB
All DBs
Position
complement(386250..388406)
Genome browser
AA seq
718 aa
AA seq
DB search
MLQYPSLEQALKYHFGYDNFRPGQRQVIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQG
LTIVVSPLIALMQDQVEALRNNNISATFLNSSLNAYQVRSREEAILNGRVRLLYVAPERL
LSERFLPFLDLVNEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNIPVLALTA
TATDRVRADIIQQLGLKQPSIHLASFNRQNLYYEVRPKTKQAYAEVLELLRETEGSAIIY
CLTRKKVEELTFKLQKDKISALPYHAGLPDNERSNNQTRFIRDDVRVIIATIAFGMGINK
PDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTLFFSFGDIKTIEWSIDQKTDPQEQL
IAKQQLRQVIDYAEGTDCRRTIQLGYFGERFAGNCDNCDNCRYPKPMQDWTIEAMKFLSC
VARCKERFGMLHIIDVLRGAKKDKIIQYEHDKLSTYGIGKDKSVDEWRILGRSLLHQGLL
EQTSDGYSVLKLNAHSWEVMRRQRQVFLSVPVVQKVSAIQESPKFEEAEALLHKLRSLRK
QLADEQSVPPYVIFHDSTLKLMVQAQPQNLLEFSKLSGVGSHKLAQYGEKFIAEIRAYRQ
EKSSQEKPVYLTPSASIVSDTELQTLHLHQQGLSIVEIARKRKLSPATISTHLEKLIEKN
QPVDLNLLVPLEHQQKIWQVLEVLGDIALTPIKEQLGEGYTFEQIRLVREKWRRQNRK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagtatccaagtcttgaacaggcgctaaaatatcacttcggttacgataacttt
cgccctggacaacgccaagtaatcgaagatgccttacaaaatcgggatttgatggtagtg
atgccgacgggtgggggaaagtctttgtgctttcagctacctgcattgatgaagcagggg
ctaactattgtggtatcacctttgattgctttgatgcaagaccaagtagaagcactgcgt
aataataatatctcggctacgtttcttaatagtagtttgaatgcttatcaagtgcgatcg
cgggaagaagccattcttaatggtagggtaagattactctacgtcgccccggaacgtctc
ttgagtgaaaggtttctgccatttctcgatttagtcaacgaaaaagttgggatatctata
tttgcaatcgacgaagcacattgtgtttctgagtggggacatgattttcgtccagaatat
cgtcagttaaaatccctgcgtaaacgttaccccaatattcccgtcctcgcccttaccgcc
acagctaccgatagggttcgtgctgatatcatccaacaactggggttaaaacaaccaagt
attcaccttgctagttttaatcgccaaaatctctattacgaagtccgccctaaaactaaa
caagcttacgcagaagtattagaattactgcgagaaactgaaggttcagcaattatttat
tgtttaactcgtaaaaaggttgaagaactgacatttaaactgcaaaaagataagatttct
gccttaccttatcatgctggattacctgataatgaacggagtaacaatcaaacgcgattt
attcgggatgatgtgcgggtaattatagctacaattgcatttggtatgggaattaataag
ccagatgtgcgcttagttgttcactttgatattccccgaaatttggaaagttactatcaa
gaatcaggtagggctggtagagatggtgaaccatcacgctgtacactatttttcagtttt
ggtgatattaaaactattgaatggagtatagaccaaaaaactgacccccaagagcagtta
attgcaaaacaacaactgcgacaggtgatagattatgctgaagggacagactgtcgccgt
acaattcaactgggttattttggcgaaaggtttgcaggtaattgtgataactgtgataat
tgccgttatcccaaaccgatgcaagattggactattgaagcgatgaagttcctttcttgt
gtggcgcggtgtaaagaaagatttgggatgctacacataattgatgtgttgcgtggggcg
aaaaaagacaaaattattcaatacgaacacgataaactttctacttacggtatcggtaaa
gataaaagcgtggatgagtggcgaatcttggggagatcgcttctacatcaaggtttactc
gaacaaactagcgatggttattcagttttaaaattaaacgcccacagttgggaagtgatg
cggcgacaacgccaagtatttctttctgttcctgtagtccaaaaagtgagtgcaatacag
gaaagtcccaaatttgaagaagcagaagcattgttgcacaaattgcgatcgctacgtaag
caacttgctgatgaacagtctgtaccaccatacgttatctttcacgattccacattaaag
ttaatggtacaggcgcaaccccaaaacttactggaattttctaaactttctggtgttggt
agccataaattagcccagtatggtgaaaaattcattgctgaaattcgtgcctaccgccaa
gaaaaatcctcacaagagaaacctgtttacctcacaccttcagcaagcatagtttcggac
actgaattacagacattgcacttacatcaacaaggcttaagtattgtcgaaattgctcgt
aaacgcaaactctctcctgccacaatttcaactcatttagaaaaactaatcgagaaaaat
caaccagtagacttaaacctactagttcctttggaacatcaacaaaaaatatggcaagtc
ctagaagtgcttggtgatattgcgttgacacccatcaaagaacagttgggtgaaggctat
acctttgagcaaattcgcctagtgagagaaaaatggcgacgacaaaacaggaagtaa
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