Nostoc sp. NIES-3756: NOS3756_44340
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Entry
NOS3756_44340 CDS
T04170
Name
(GenBank) 3'-5' exoribonuclease, VacB and RNase II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
non
Nostoc sp. NIES-3756
Pathway
non03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
non00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NOS3756_44340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
non03019
]
NOS3756_44340
03016 Transfer RNA biogenesis [BR:
non03016
]
NOS3756_44340
Enzymes [BR:
non01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NOS3756_44340
Messenger RNA biogenesis [BR:
non03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NOS3756_44340
Transfer RNA biogenesis [BR:
non03016
]
Prokaryotic type
tRNA degradation factors
NOS3756_44340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BAT55447
LinkDB
All DBs
Position
5172169..5174523
Genome browser
AA seq
784 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKVLEKKLGCEDEDSLEKLHIALEVLEKIGVLGKERGKYRR
ISEEGLIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLILERSNHTLLARIKQVEGGFRAVPLDDRLLFELKILANKLKLEEAIDHLAHVE
VLRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLARNFPESILEAAAKLPKRLLKA
DLKNKLDLRNLFTFTITSINGDTKVVENALSLEKTISGNWQLGFHIADVSHYVQPDEPLD
REAIKRGRSVYLGDLVLPMLPDTVADRASLVTGSDRLALSFLITISPQSGEVLEWEIQPS
VINVDTSITKQQAQAILQGEVGKKDSPQVVEILQNLATIAQGIKESRLTRGSLQLNLPSN
QNPYYDEGILGAVLVNDSPVRSLLAELVLLVNELIATHLSALGVPAIWRVQGTPDSEDVQ
EMLKLAINLGVELALEPDVEIEPLDYQQLTRAFAESPSEQVLTYLLQDTLKPAAYSTTKT
SHFGLALPQYTHFTSPMRRYPDLLMQRVYYQLLEHGRDRRNTRVKERVNLRHSSSHAEIN
WNVLAPELQQEMQSDLTRVIIQINDREKEVQEAEADLAGLQKAQLMKQRIGQVFQGVITG
VQSYGFFVEIEVPAAEAATSTGGPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASYR
LGDRVSVQVKSVDYYRQQIDLVTVGSDGVPKNLSIGDVNGDIGDIYLPNDLDSDDLDPYA
DDEE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacactccttgccaatttcaccgatgataaattggtagctcgc
aaagttttagaaaagaaactcggttgcgaggatgaagacagtttagaaaaactccacatc
gccctggaagtattagagaaaattggggttttggggaaagaacgcgggaaatatcgccgc
atctcggaagaaggtctaatcgaggccaagttgcgttgttcgagtaaaggcttttgtttc
gctattcaagatgtagagggggctgaggatatttacatccgggaaagtcacctcagtaat
gcgtggaatggcgatcgcgttttggtacgtgttctcaaagaaggtagtcgtcgtcgttcc
ccagagggcgaggtgaagctgattctggaacgttccaatcacactctactagcgcggatt
aagcaagtggaaggtggtttccgtgctgttcccttggatgacagattgctgtttgagtta
aaaattctagctaacaagttgaagctagaagaagcaattgatcacctcgcccacgtcgaa
gtcctgcgttatcctttagcccaatatccgcctttaggtcgcgtagtgcagattttgggt
agtgatgcagaagcggcggcggatatagatttagttacatgtaaacatgacttagctcgt
aatttccctgagtcgatattagaagcagccgctaagttacccaaaaggttactcaaggca
gacctcaaaaataaactagatttacgcaatctgtttacctttacaattactagtattaat
ggcgacactaaggtagtagaaaatgccctcagtttagaaaaaacgatttctggtaattgg
caattaggttttcacattgctgatgtttctcactatgtccaaccagatgaacccctagat
agggaagctattaaacggggtaggtcggtatatttgggagatttagtattgcccatgcta
ccagatacagtggccgatcgcgcttcactagtaacgggaagcgatcgcttggcactatct
ttcttaattaccatttcccctcaatccggggaagttttagaatgggaaattcaacccagt
gtaattaacgtagacaccagcatcaccaagcaacaagcacaagccattctgcaaggtgaa
gttggcaaaaaagactcaccacaggtagtagaaatactccagaacttagccactattgct
caaggcatcaaagaatcacgcctaacccgtggtagcttgcagttaaatctgccgtcaaat
caaaacccctactacgacgaaggcattttaggggctgtgttggtgaatgattctccagtg
cgatcgctgctggcagaattggtgttattagtgaatgaattaatagcaacccatctcagt
gctttaggtgttcccgccatttggcgagttcaaggtacaccagactcagaagatgtgcaa
gaaatgctgaaattggcaattaatttaggggttgaactggcactagaaccagatgtagaa
attgaacccctagattatcaacagttaactagggcatttgctgagtctccctcagaacag
gtgttaacttatcttctacaagataccctcaagccggcagcctacagcaccaccaaaaca
tctcactttggtttagcactaccacaatacacccacttcacttcgcccatgcgccgttat
ccagatttgctgatgcagagagtatattatcagctactagaacacggacgcgatcgccgc
aataccagagtcaaagaacgggtgaacctgcgccactcctctagccacgccgaaattaac
tggaatgttttagcgccagagttgcagcaggaaatgcaaagcgacttgactagggtgatt
atccaaatcaacgatagggagaaagaagtccaagaagccgaagccgatttagctgggttg
caaaaagcccaattgatgaaacagcgtattgggcaagtctttcaaggcgtgattactggt
gtgcagtcctacggtttcttcgtagaaattgaagtcccagccgccgaagcagccacgagt
actggcgggcctttgcgtgttgaaggattagtacatgtcagttctctcaaagatgactgg
tatgagtaccgcgctagacaacaagcactctttggcagaaaaaatcgtgcttcttataga
ttaggcgatcgcgtttccgtacaagttaagagtgtcgattactatcgccagcaaattgat
ttagtcaccgttggtagtgatggcgtacccaaaaatctaagtatcggcgatgtcaatggt
gatattggtgatatatacctaccaaatgaccttgattctgacgacttagatccctatgct
gatgatgaagaataa
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