Nostoc sp. NIES-3756: NOS3756_45030
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Entry
NOS3756_45030 CDS
T04170
Name
(GenBank) transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
non
Nostoc sp. NIES-3756
Pathway
non03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
non00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NOS3756_45030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
non03400
]
NOS3756_45030
Enzymes [BR:
non01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NOS3756_45030
DNA repair and recombination proteins [BR:
non03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NOS3756_45030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAT55515
LinkDB
All DBs
Position
complement(5242912..5246457)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAFSSIVRALARSPLTTELLSKLNRQQDLRLNGIPRLPKGLVASALAQNSGSNLFVVCAT
LEEAGRAYAQLEAMGWSTVHFYPTSEASPYEPFDPETEMTWGQMQVLADLLKSQQSTVNS
QQSTVNGQQSTVNSQQNKIAVVATVGALQPHLPPPDAFTPFCLTLKRGMEFDLDTFSEKI
TTLGYERVPLVETEGQWSRRGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPNTQRSALD
KIPQIVLTPTSFAPIITTALKDSAEFRMLSAELSSDSCGEDLAVIEGTRRFLGLAFGQPA
SVLDYLPENTLIAIDEPEQCHAHSDRWVENAEEQWSLGTGEADLGSLQLPKIHRSFDECL
ADVTRFKTIYLSELAEENSGINLASRSVPVTPHQFAKLADTLRQERDRNFSIWLLSAQPS
RSVSLLQEHDCPAQFIPNPRDYQAIDKLVINHTPVALKYSGLAELEGFILPTYRIVVITD
REFYGQHSLATPSYIRKRRKAASKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTINDETR
DYIVVQYADGLLRVAADQVGALSRFRSTGDKAPELHKMTGKAWDNTKNRVRKAIKKLAVD
LLKLYAARSQQQGFSYPQDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMESDRPMDRLVC
GDVGFGKTEVAIRAIFKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYPVNIGLLNRFR
TAEERRDIQKRLATGELDVVVGTHQLLGKGVNFKDLGLLVIDEEQRFGVNQKEKIKTLKT
QLDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIKTHLAPKQPETIRSAIRQELD
RGGQVFYVVPRVEGIEETTTALREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVC
TTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDAAR
QRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIR
GQEIPKVDDTQIDLNLTAFIPADYIPDIDQKMSAYRAVAAAKSKEELTQIVAEWSDRYGT
LPVSANQLLRVMELKQLAKKLGFSRIKPENKQHVVLETPMEEPAWNLLAANLPEHLKTRF
VYSPGKVTVRGLAVLKADQQLQSLIDAMSKMQGAIAEAVVV
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctattgtgcgtgccttggcgcgatcgccactcaccactgagttactt
tctaagctcaatcgccaacaggatttacgcctcaatggcattccccggctacccaagggc
ttggtagcatccgcattggcacagaatagtggcagtaatttatttgttgtatgtgccacc
ttagaagaagccggacgcgcttacgcacagttagaggcgatgggatggtcaacagtacac
ttctaccctacatcagaagcctctccctacgaaccatttgacccagaaacagaaatgact
tggggtcagatgcaggttttggctgatttgttgaagagtcaacagtcaacagtcaacagt
caacagtcaacagtcaacggtcaacagtcaacagtcaacagtcaacaaaataagatagcg
gttgtggctactgttggggctttacaacctcatttaccaccgcctgatgcttttactcct
ttttgcctcacccttaagcgggggatggaatttgatttagatacttttagtgagaaaatt
actactttaggatacgaacgggttcctttggtggaaactgagggacaatggagtcggcgt
ggggatattgttgatgtgttcccagtttcgtcagaattgcctgtacgtttggaatggttt
ggtgatgaaattgagcaaatacgggaatttgacccgaatactcagcgttcagcacttgac
aaaataccgcaaattgtgcttacgcctacaagctttgcacctattattacgactgcgcta
aaggatagtgctgagttccgaatgctgagtgctgagttaagttctgattcctgtggggag
gacttagcagttatagaaggaactcggcggtttttgggtttggcttttggacaacctgca
tcagtgttagattatttgcctgagaatactttaatcgctattgatgagccggaacaatgt
catgctcatagcgatcgctgggtggaaaatgctgaggaacaatggtcactgggaacagga
gaagcggatctaggaagtttacaattaccaaaaatccatcggtcttttgatgaatgtttg
gctgatgtgactcgatttaaaactatatatttatcagaactagcggaagaaaatagcggg
attaatttggctagtaggtctgtacctgttacaccacaccaatttgccaaattagcagat
acattaagacaagagcgcgatcgcaatttttctatctggttactctcggcgcaaccttcc
cgttctgtctctctactacaagaacacgattgccccgcccagtttatccctaatcctcgc
gattatcaagcaattgacaaattggtaatcaaccatacacccgtagcgctgaaatattct
ggtctggcggagttggaaggttttattctccctacctaccgcatagtagtcatcactgac
cgggaattttacggtcagcactccctggctacaccaagttatatccgcaagcggcgcaag
gcggcttctaagcaagttgatcccaacaagctgcgtccaggggattatgtggttcacaga
agccacggaattggtaagtttgtcaagctggaaagtctgacaattaacgatgaaacccgt
gattatattgtggtgcagtatgctgacggtcttttgcgggtagcggctgaccaagtaggt
gctttgtctcggttccgcagtacgggagataaagcgccggaactgcacaagatgacaggg
aaagcttgggataatactaaaaaccgtgttcgcaaggcgattaagaaattagcggtagac
ttgctgaaattatacgcggcgcgatcgcaacagcaaggattttcctatccccaagatatg
ccttggcaagaggaaatggaagattctttcccctaccaacctacaaccgaccagctaaaa
gccgtccaagatgtcaaacgggatatggaaagcgatcgcccaatggataggttagtatgt
ggtgatgtgggtttcgggaagacggaagtagcgatacgtgcgattttcaaggctgtgaca
tcggggaaacaagtcgcactcctagcaccgacaaccatcctcacccagcaacattaccac
accctcaaagaacgcttcgccccctatcctgtaaacatcgggttattgaaccgcttccgc
acagccgaggaacggcgggatattcaaaaacgattggcgacgggtgagttagatgtagtt
gtgggaacacatcaacttttaggtaaaggtgtaaatttcaaagatttagggttgttggta
atagatgaggaacaacggtttggggtgaaccagaaggaaaaaattaaaactttgaaaacc
caacttgatgtcttgactctctccgctacccccatcccccgcaccctgtatatgtcattg
tcggggataagggaaatgagtttgattaccaccccaccccccacaagaaggccaattaaa
acccatcttgcacccaaacaaccagaaaccatacgcagtgcaattcgccaggaactagac
cgaggcggacaggtgttttatgtagttccccgtgtggagggaattgaggagacaacaaca
gcattacgggagatggttcccggtgcgagatttgcgatcgctcacgggcaaatggacgag
agcgagttagaatcaaccatgctcacctttagcaatggtgatgcagatattttggtgtgt
acgacaattattgaatctgggttagatattccccgcgtcaacaccatcttaattgaagat
gctcaccgctttggattatcgcaactttaccagttacgcggacgggtaggacgtgcgggt
attcaagcccacgcatggttattttatcccaagcaacgcgccttatcggatgcagcaagg
cagagattacgagccattcaagaatttacccaacttggttccggctatcaactagcaatg
cgcgacatggaaatccggggtgtgggtaacttgctaggtgcagaacagtccggtcaaatg
gaagccattggttttgatttgtacatggaaatgttggaggagtcaattagagaaattcgc
ggtcaagaaattcccaaagttgacgatacccaaatcgacctcaacctcaccgcatttatt
cccgccgattatattcccgatattgaccaaaagatgagtgcatatcgtgcggtagcggcg
gcgaagtcgaaagaagaattaacgcagattgtagctgagtggagcgatcgctatggtact
ttaccagtcagtgccaatcaactcttgcgggtgatggaactcaaacaattagccaagaaa
ttaggatttagccgcatcaaaccagagaacaaacagcacgttgttttagaaacgccgatg
gaagaacctgcatggaatttacttgcagctaacttaccagaacatctcaagacacgcttt
gtttactctcctggtaaggtgacagtgcgcggtttagcagtgctgaaagctgatcaacaa
ttgcaaagtttgattgatgcaatgagtaaaatgcagggagcaattgcagaggcggttgtt
gtttag
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