Nostoc sp. NIES-3756: NOS3756_47900
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Entry
NOS3756_47900 CDS
T04170
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
non
Nostoc sp. NIES-3756
Pathway
non03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
non00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NOS3756_47900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
non03019
]
NOS3756_47900
03009 Ribosome biogenesis [BR:
non03009
]
NOS3756_47900
Enzymes [BR:
non01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NOS3756_47900
Messenger RNA biogenesis [BR:
non03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NOS3756_47900
Ribosome biogenesis [BR:
non03009
]
Prokaryotic type
rRNA helicases
NOS3756_47900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAT55797
LinkDB
All DBs
Position
complement(5593681..5595219)
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AA seq
512 aa
AA seq
DB search
MNFSFQELGISQDRVEHLEKLGFTEPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLP
ILERLDVNQKAVQALVLTPTRELAIQVHDAMAQFVGNSGLRALAIYGGQSIDRQILQLKR
GVQLVVGTPGRVIDLLERGCLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTA
LFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERH
VRQNWQLLTIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAA
LQIAYDQTRPAWLSTEIDVAEEVVSTPKPKLMKRRGESGDRGGRNWNKSDNNGDEERRGS
PKPKLRGGSRRESSVAPGNPKLGSPAARESAS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaacttttcgtttcaagaactaggaatttcccaagaccgtgtagaacacttagaaaaa
ctaggttttaccgaaccaacaaacattcaagcccaagctattcctcaactattgtcaggg
cgtgatgtagtaggtcaatcacaaacaggtacaggtaaaacagccgcattttcactgcca
atattagaacggttagacgttaaccaaaaagcagtgcaagccctagttttaaccccaacc
cgtgaattagccattcaagtccacgatgcaatggctcaattcgttggtaacagtggcttg
cgtgctttggcaatttacgggggtcaatcaattgaccgccaaatcttacaactcaaacgc
ggcgtgcaacttgtcgtcggtacaccaggacgggtaattgacttactagaacggggttgt
ctgaagctagaccaagttaaatggtttgtgctggatgaagctgatgaaatgttaagcatg
ggctttatcgacgatgtagagaaaattctttctcaagcaccccaagaccggcagacagct
ttgttctctgctaccatgccaccatcaattcggatgttggtcaacaagttcttgcgttct
ccagttaccgtcaccgttgagcagcccaaagctacaccaaataaaatcaatcaggtagct
tatctcatcccccgccactggacaaaagccaaagccttacagccaattctggaaatggaa
gacccagaaacagctctaatctttgttcgtaccagacgcacagccgccgaactcaccagc
caactgcaagctgctggtcacagtgtagatgaatatcacggcgacttgtcccaacaagca
agggaaagattattaactcgcttccgtaatcgtcaagtacgctgggtagtagcaacagac
attgctgcacgcggtttagatgttgaccaactatctcacgtaatcaactacgacttgcct
gatagcgtagaaacctacgttcacagaattggtcgtactggtcgcgctggtaaagaaggt
acagctatcaccttagtacaaccttttgagcgtcgcaaacagcaaatatttgaacgccat
gttcgccaaaattggcaattgcttaccatccccacaagggcgcaaatcgaagcacgccac
attttgaaactgcaagagcaagttagagaagcgttagctggtgaacgtttggcttccttc
ttacccatcgttagcgaattgattgagaaatatgatgctcaagcgatcgccgcagcagct
ctgcaaatcgcttatgatcaaactcgtcccgcttggttaagcacagaaatcgacgttgcc
gaagaagtcgtatccacccccaaacccaagctgatgaagcgtcgtggtgaatctggtgac
agaggcggccgcaactggaacaaatcagataacaacggtgacgaagaaagacgcggtagt
cccaaaccaaaattacggggtggtagccgtcgtgaatcttccgttgcaccaggtaatcct
aaattaggttcacctgctgctagagagtctgcttcttag
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