Nocardioides sp. S-1144: FE634_00265
Help
Entry
FE634_00265 CDS
T06354
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
noo
Nocardioides sp. S-1144
Pathway
noo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE634_00265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noo03019
]
FE634_00265
03400 DNA repair and recombination proteins [BR:
noo03400
]
FE634_00265
Enzymes [BR:
noo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FE634_00265
Messenger RNA biogenesis [BR:
noo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FE634_00265
DNA repair and recombination proteins [BR:
noo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FE634_00265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
PglZ_C
Cas3-like_C_2
DUF8096
Motif
Other DBs
NCBI-ProteinID:
QCW49237
LinkDB
All DBs
Position
50933..53032
Genome browser
AA seq
699 aa
AA seq
DB search
MESPTTTVTRERAEAHLRALVGRDDVSLRDDQWTAIEALAVARRRALVVQRTGWGKSAVY
FVATLLLRAEGAGPTVIVSPLLALMRNQIAAAERAGIRAVTINSTNLEQWDQTHRAIAAG
EVDVLLVSPERLNNPGFRDEVLPALAATCGLLVVDEAHCISDWGHDFRPDYRRIRTLLGD
LPEGIPVLATTATANARVTADVAEQLGTDALVLRGTLDRESLRLGVVRLRTAQQRLAWLA
DHLAEQPGSGIVYCLTVAATQEVADYLRSRGHDVAAYSGQTEQTERLGLESALAEGRVKA
LVATSALGMGFDATLGFVVNLGAPQSPVAYYQQVGRAGRGLADGESATVVLLPALEDRDI
WAYFGSLSFPPEQQVRQTLEVLAEEGRSMSTAGLETRVELSRTRLEQMLKVLDVDGAVRR
VRGGWEATGRDWSYDEERYRRVREAREREQAAMLAYLDTDVCRMRYLREQLDDPDAVDCG
RCDNCGGLTLDAAVSDVAVAEATERLSRPGVPIEPRRMWPTGLAAMGIELKGKIAAGAEE
GRAIARLTDLGHGQALRALLAAGAGDVPVPDGLARALVDVLMDWRPQVHGIVVVESMSRP
TLTADLAANLSRFLKKPVVGRYAVVDPDIEPGRGAMNSAQRVSAVGRRFALELDEPVEGR
SLLLVDDLVVTGWTLTRAAVALRARGADAVLPLTLGVER
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggagtccccgacgaccaccgtgacccgcgagcgggccgaggcgcacctgcgcgccctg
gtcggccgggacgacgtgagcctgcgcgacgaccagtggaccgcgatcgaggcgctcgcc
gtcgcgcggcgccgcgcgctggtcgtgcagcgcaccggctggggcaagtcggcggtctac
ttcgtggccacgctgctgctgcgcgccgagggcgccgggccgacggtcatcgtctcgccg
ctgctggcgctgatgcgcaaccagatcgccgccgccgagcgcgccggcatccgcgcggtc
acgatcaactccaccaacctcgagcagtgggaccagacgcaccgcgcgatcgcggccggt
gaggtcgacgtcctgctggtgagcccggagcggctcaacaacccgggtttccgcgacgag
gtgctgcccgcgctggcggcgacgtgcggcctcctcgtcgtcgacgaggcgcactgcatc
agcgactggggccacgacttccgccccgactaccgccgcatccgcaccctgctcggcgac
ctgcccgagggcatcccggtgctggcgaccaccgccaccgcgaacgcccgggtcaccgcc
gacgtcgccgagcagctcggcaccgacgcgctggtcctgcgcggcaccctcgaccgcgag
tccctgcggctcggcgtcgtgcggctcaggacggcccagcagcggctggcctggctggcc
gaccacctcgccgagcaacccggctccggcatcgtctactgcctcacggtcgccgcgacc
caggaggtcgccgactacctgcgctcccgcgggcacgacgtcgcggcctactccgggcag
accgagcagaccgagcggctgggcctcgagtcggcgctggccgagggccgggtgaaggcc
ctggtggccaccagcgcgctcggcatgggcttcgacgccaccctcggcttcgtcgtcaac
ctcggggcgccgcagtccccggtcgcctactaccagcaggtcggccgcgccggccgtggt
ctcgccgacggcgagagcgccaccgtcgtgctgctgcccgcgctggaggaccgcgacatc
tgggcctacttcggctcgctctccttcccgcccgagcagcaggtgcgccagacgctcgag
gtgctcgccgaggagggccggtcgatgtcgacggccggcctcgagacccgcgtcgagctc
agccgcacccgcctggagcagatgctcaaggtgctcgacgtcgacggcgcggtccgccgg
gtgcgcggcggctgggaggccaccgggcgcgactggtcctacgacgaggagcgctaccgc
cgggtccgcgaggctcgcgagcgcgagcaggctgcgatgctggcctacctcgacaccgac
gtctgccggatgcgctacctgcgcgagcagctcgacgaccccgacgccgtcgactgcggc
cgctgcgacaactgcggcggcctcaccctcgacgccgccgtctccgacgtcgccgtcgcc
gaggccaccgagcgcctcagccgccccggcgtcccgatcgagccccggcggatgtggccc
accggcctcgccgcgatgggcatcgagctcaagggcaagatcgcggccggggccgaggag
ggccgcgcgatcgcccggctcaccgacctcggccacggccaggccctgcgcgcgctcctc
gccgccggcgcgggcgacgtcccggtccccgacgggctggcgcgcgccctggtcgacgtc
ctgatggactggcgcccgcaggtgcacggcatcgtcgtcgtcgagtcgatgagccgaccg
acgctcaccgccgacctcgccgccaacctctcccgcttcctcaagaagcccgtcgtcggc
cgctacgccgtcgtcgaccccgacatcgagcccggccgcggcgcgatgaactccgcccag
cgcgtctccgcggtgggccgccgcttcgccctcgagctcgacgagccggtcgaggggcgc
tcgctgctcctggtcgacgacctcgtcgtcaccggctggaccctcacccgcgccgccgtc
gccctgcgcgcccgcggcgccgacgccgtgctgccgctcaccctcggcgtcgagcgctga
DBGET
integrated database retrieval system
