Nocardioides sp. S-1144: FE634_07685
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Entry
FE634_07685 CDS
T06354
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
noo
Nocardioides sp. S-1144
Pathway
noo03420
Nucleotide excision repair
noo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FE634_07685
03430 Mismatch repair
FE634_07685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noo03400
]
FE634_07685
Enzymes [BR:
noo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FE634_07685
DNA repair and recombination proteins [BR:
noo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FE634_07685
MMR (mismatch excision repair)
Other MMR factors
FE634_07685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QCW52459
UniProt:
A0A5B7RIF5
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All DBs
Position
1580611..1583814
Genome browser
AA seq
1067 aa
AA seq
DB search
MVVDTPERLRDLLGESWTFSEAQFTAITAPLEPAVVIAGAGSGKTSVMAARVVWLVATGQ
VAPAEVLGLTFTTKATAELETRIRESLRGAGLLPERSAPRDDDDEEVEEPTVSTYHSYAS
ALLSEHGLRIGHEPDTRLITDASRYQLAARAVQRYTAPVAHLTDSPLHVVRYLLALDAEM
SEHLVSPAQVRAHDAAARPLFEAGMLTEHRSTYRAKNEKAIATIDARAELLGLVEAYRGL
KAHLGLMDFSDQIALAARLAETCPEVGEVERGKYRVVLLDEYQDTSVAQALMLSRLFSGA
EGQPGRGHAVTAVGDPNQAIYGWRGASVSNILEFGQDFPAVDGATTTYPLVVNRRSDRRI
LATANHLAADLYALRSDLLPLEPTPGAAEGDVRAIVHETSLDELDWLAEQVLATHAELAA
AREGPVWKEIGVLTRDNATAAAAFDALTAREVPVEIVGLKGLLRLPEVAEVVATLTLVQD
VTANAALLTLLAGPRWAIGPRDLALLGRRAGELAGARTGAETFPDVHEQLVAAVEGADPT
EIPSLCDALEDLGDAGYSAEARERFVLLAAELRRLRSAIGEPILDLVRRIIDTTGIDVEL
ASSVSPAAAARRDNLDLFVQAVAEFQAVDGQVTLAALLAWLEAEDEHGQGLDVATPSEAD
SVKLLTVHRAKGLEWDAVFLVGVTDKKFPTSRGRSSWLTVSSVMPTALRGDARDLPQLAG
HTPADIADVARRAKAHDALEELRLGYVAWTRARHLLWVSAWRWAPHLKTGNGPSPYLVRT
REAMAGWGGEPDAWGEVVAKGEVSPFAGRVVDQPWPISHHTPEVERRLDAAARVRAADPD
AGDDLEDVLELDRVQQWDDEIERLLDEAARERASEIVVPLPSSLSATSVARLRDDPDAFA
RDLARPMPRAPSPAARFGTRFHAWVEARFGQQLLLDPDDLPGRADAGIEDDADLQELIAA
FERGPFAERPPLVVEPSFALVLAGQVVRGRIDAVYAEGEDFLVVDWKTGRGGGTDPLQLA
LYRLAWAELRGVDVERVRAAFYHVRSGRLVEPADLPGRDELTRLLDL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
ctggtcgtcgacacccccgagcggctgcgcgacctgctgggggagtcgtggaccttcagc
gaggcccagttcaccgcgatcaccgcgccgctcgagccggcggtcgtcatcgccggcgcg
gggtcgggcaagacctcggtgatggcggcgcgggtggtgtggctggtcgcgaccggccag
gtcgcgcccgcggaggtgctcggcctcacgttcacgaccaaggccaccgccgagctcgag
acgcgcatccgggagagcctgcggggcgccggcctgctgcccgagcgctcggccccgcgc
gacgacgacgacgaggaggtcgaggagccgaccgtctcgacctaccactcctacgcctcg
gcgctgctctccgagcacggtctgcggatcggccacgagcccgacacccgcctgatcacc
gacgccagtcgctaccagctcgcggcgcgggcggtccagcgctacaccgcgccggtggcg
cacctgaccgactcgccgctgcacgtcgtccgctacctgctcgcgctcgacgccgagatg
agcgagcacctggtgagccccgcccaggtgcgcgcgcacgacgcggcggcccggccgctc
ttcgaggccgggatgctcaccgagcaccgctcgacctaccgcgcgaagaacgagaaggcg
atcgcgaccatcgacgcgcgcgccgagctgctcggcctggtcgaggcctaccgcggcctc
aaggcccacctcggcctgatggacttctccgaccagatcgcgctcgccgcccgcctcgcc
gagacctgccccgaggtgggcgaggtcgagcggggcaagtaccgcgtggtgctgctcgac
gagtaccaggacacctcggtcgcccaggcgctgatgctgagccggctcttctcgggggcc
gaggggcagcccgggcgcggccacgccgtgaccgccgtcggcgaccccaaccaggccatc
tacggctggcgcggggcatcggtctccaacatcctcgagttcggccaggacttcccggcc
gtcgacggcgccaccacgacctacccgctcgtggtcaaccgccgctccgaccggcggatc
ctcgccacggccaaccacctggccgccgacctctacgcgctgcgcagcgacctgctgccg
ctcgagccgacgccgggcgcggccgagggcgacgtccgcgccatcgtgcacgagacctcc
ctcgacgagctcgactggctcgccgagcaggtcctcgccacccacgccgagctcgccgcc
gcccgggaggggccggtgtggaaggagatcggcgtcctcacccgcgacaacgccaccgcg
gcagcggccttcgacgccctcaccgcgcgcgaggtgccggtcgagatcgtcggactcaag
gggctgctccggctgccggaggtggccgaggtcgtcgccaccctcaccctggtccaggac
gtcaccgccaacgccgccctgctgaccctgctggccggcccgcgctgggcgatcggccca
cgcgacctggcgctgctcgggcgccgggccggcgagctcgccggcgcgcgcaccggggcc
gagaccttccccgacgtccacgagcagctcgtggcggcggtcgagggcgccgacccgacc
gagatcccgtcgctgtgcgacgccctcgaggacctcggcgacgccggctactcggccgag
gcccgcgagcggttcgtcctgctggccgccgagctgcgccggctccgctccgcgatcggc
gagccgatcctcgacctggtccgccggatcatcgacaccaccggcatcgacgtcgagctc
gcctcgtcggtcagcccggcggccgcggcgcggcgcgacaacctcgacctcttcgtgcag
gccgtcgccgagttccaggccgtcgacggccaggtcaccctcgccgcgctgctcgcctgg
ctcgaggccgaggacgagcacggccagggcctcgacgtcgcgacgccgtccgaggccgac
tcggtcaagctcctcaccgtccaccgtgccaaggggctcgagtgggacgccgtcttcctg
gtcggcgtcaccgacaagaagttccccaccagccgcggccggtcgagctggctgacggtg
tcgtcggtgatgccgaccgccctgcgtggcgacgcccgcgacctgccgcagctggcgggc
cacacgcccgccgacatcgccgacgtcgcccggcgcgccaaggcccacgacgccctcgag
gagctccggctcggctacgtcgcctggaccagggcccggcacctgctgtgggtctcggcc
tggcgctgggcgccgcacctcaagaccggcaacggtccctcgccctacctcgtgcggacc
cgggaggcgatggccgggtggggcggcgagcccgacgcctggggcgaggtcgtcgccaag
ggcgaggtcagccccttcgccgggcgggtggtcgaccagccctggccgatctcgcaccac
acgcccgaggtcgagcggcgcctcgacgccgccgcccgggtccgggccgccgaccccgac
gccggcgacgacctcgaggacgtcctcgagctcgaccgggtccagcagtgggacgacgag
atcgagcggctcctcgacgaggccgcccgcgagcgggcctccgagatcgtcgtgccgctg
ccctcgagcctctcggcgacgtccgtggcgcggctgcgcgacgaccccgacgccttcgcc
cgcgacctggcccgcccgatgccccgcgccccctcgccggcggcccgcttcggcacccgg
ttccacgcctgggtcgaggcgcgcttcggccagcagctgctgctcgaccccgacgacctg
cccggccgcgccgacgccggtatcgaggacgacgccgacctgcaggagctcatcgccgcc
ttcgagcgagggcccttcgccgagcgtccgccgctcgtggtcgagccgtccttcgcgctg
gtgctggccgggcaggtcgtgcgcggccggatcgacgcggtctacgccgagggcgaggac
ttcctcgtcgtcgactggaagaccggccgcggcggcggcaccgacccgttgcagctggcg
ctgtaccggctggcctgggccgagctgcgcggtgtcgacgtggagcgggtgcgggcggcg
ttctaccacgtgcgcagcggccggctggtcgagccggccgacctccccggccgcgacgag
ctgacgaggctgctcgatctgtga
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