Nocardioides sp. S-1144: FE634_09080
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Entry
FE634_09080 CDS
T06354
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
noo
Nocardioides sp. S-1144
Pathway
noo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE634_09080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noo03021
]
FE634_09080
03019 Messenger RNA biogenesis [BR:
noo03019
]
FE634_09080
Transcription machinery [BR:
noo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FE634_09080
Messenger RNA biogenesis [BR:
noo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FE634_09080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QCW50525
UniProt:
A0A5B7RDJ7
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All DBs
Position
1880809..1882839
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AA seq
676 aa
AA seq
DB search
MTETPDTAPTASAKKRTGGLSAMLLADLKSMAGGMGIAGAGSMKKAQLIDAIKGAQASAV
PGGSGGSGDGGAAPAAARRRKPAAQAEAQAELPVTPSEETAAPARERQPRRRREQDPAAG
AASTEPQRPGSAPAEAQPAEQRQPEQDQAGSRRSERQAERQADREADRQDDRPDDRQSDR
QGEKKQGKQNQVEKPEQKPAQKSEPRPDQQSDQGDGDGDGEGRTGRNRRRRGRDRNRVAG
DAGGQGGGQGGQGGAPASQGPKQNAGNQGNQGNQGKDGGGQGGGHRHEPDTTILEDDVVV
PAAGILDVLDNYAFVRTSGYLPGADDVYLSLSMVRKFGLRRGDAIVGQVRQPREGERREK
FNPMVRIDSVNGHDPEQSRSRADFDRLTALYPSERLRLETESANLVGRVVDVVAPIGKGQ
RGLVVAPARSGRTTVLQSIAQSVSVNNPECHLMVVLVDERPEEVTDYERSVKGEVISSTF
DRPAGDHTVVAELAIERAKRLVELGHDVVVLLDGLTRLARAYHHSTPASGRLLAGGVDAA
ALHPTKKFFGAARNIENGGSLTIIATAVVESGSVMDEVIFEEFAGTGNMELRLRRDLADK
RVFPAIDPVQSGTRREELLMSEEELAIVWKLRRVLSNLDGQQALELLLERLRRAGTNIEF
LMNVQKATPKNGQAAI
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaacgcccgacaccgccccgaccgcctcggccaagaagcggaccggcggactc
agcgcgatgctgctcgccgacctcaagtcgatggcgggcgggatgggcatcgccggcgcc
ggctcgatgaagaaggcgcagctgatcgacgccatcaagggcgcccaggcctcggccgtg
cccggtgggtccggtgggtccggcgacgggggagcggcacccgccgccgcccggcgccgc
aagccggccgcgcaggcggaggcccaggccgagctcccggtgaccccgtcggaggagacc
gccgcgcccgcccgggagcggcagccgcggcgccgccgcgagcaggacccggccgccggg
gcggcgtcgacggagccgcagcgacccggttcggcgcccgccgaggcccagccggccgag
cagcggcagcccgagcaggaccaggccgggtcgaggcggtccgagcgccaggccgagcgc
caggccgaccgcgaggccgaccgccaggacgaccgcccggacgaccgtcagtcggaccgg
cagggcgagaagaagcagggcaagcagaaccaggtcgagaagccggagcagaagccggcc
cagaagagcgagccgaggcccgaccagcagtccgaccagggcgacggcgacggcgacggc
gagggccgcaccggccgcaaccggcgtcgtcgcggccgtgaccgcaaccgcgtcgccggc
gacgcgggcggccagggcggtggccagggcggccagggtggagcacccgcgagccagggc
ccgaagcagaacgccggcaaccagggcaaccagggcaaccagggcaaggacggcggcggc
cagggcggcgggcaccggcacgagccggacaccacgatcctcgaggacgacgtcgtcgtc
ccggcggccggcatcctcgacgtcctcgacaactacgccttcgtccgcaccagcggctac
ctgccgggcgccgacgacgtctacctgtcgctgtcgatggtccggaagttcgggctgcgc
cgcggcgacgcgatcgtcggccaggtgcgccagccgcgcgagggcgagcgccgcgagaag
ttcaacccgatggtgcgcatcgacagcgtcaacggccacgaccccgagcagtcgaggtcg
cgggccgacttcgaccggctcaccgcgctctacccgtccgagcggctgcgcctcgagacc
gagtcggccaacctcgtcggccgggtcgtcgacgtcgtggcgccgatcggcaagggccag
cgcggcctggtcgtcgcgccggcgcgctcgggccgcacgacggtgctgcagtcgatcgcc
cagtcggtcagcgtcaacaacccggagtgccacctgatggtcgtcctcgtcgacgagcgg
cccgaggaggtcaccgactacgagcgctcggtcaagggcgaggtgatctcctcgaccttc
gaccgcccggccggtgaccacaccgtcgtcgccgagctcgcgatcgagcgcgccaagcgc
ctcgtcgagctcggccacgacgtcgtcgtcctgctcgacggcctgacccggctggcccgt
gcctaccaccactccacccccgcgtccgggcggctgctcgccggcggcgtcgacgccgcg
gcgctgcacccgacgaagaagttcttcggggcggcccgcaacatcgagaacggcggctcg
ctgaccatcatcgccaccgccgtcgtggagagcggctcggtgatggacgaggtgatcttc
gaggagttcgccggcaccggcaacatggagctgcggctgcgccgcgacctcgccgacaag
cgggtcttcccggccatcgaccccgtgcagtcgggcacccggcgcgaggagctgctgatg
agcgaggaggagctggcgatcgtctggaagctgcgccgggtcctgtccaacctcgacggc
cagcaggcgctcgagctgctgctggagcggctgcggcgggccggcaccaacatcgagttc
ctgatgaacgtgcagaaggccaccccgaagaacgggcaggcggcgatctga
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