KEGG   Nocardioides dongxiaopingii: FE634_19695
Entry
FE634_19695       CDS       T06354                                 
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
noo  Nocardioides dongxiaopingii
Pathway
noo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:noo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    FE634_19695 (uvrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:noo03400]
    FE634_19695 (uvrA)
DNA repair and recombination proteins [BR:noo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FE634_19695 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      FE634_19695 (uvrA)
SSDB
Motif
Pfam: ABC_tran UvrA_DNA-bind AAA_21 AAA_29 DnaJ_CXXCXGXG AAA_16 nSTAND1 AAA_22 AAA_33 NACHT AAA_25 AAA_18 MeaB AAA_15 YmcF-like Viral_helicase1 Anti-TRAP nSTAND_NTPase5 MobB AAA_14 NTPase_1 DUF5351 DUF463 SCO2_C DUF87
Other DBs
NCBI-ProteinID: QCW52081
LinkDB
Position
complement(4077744..4080224)
AA seq 826 aa
MPHDPNDPFVRVRGASEHNLKNVDVDVPRDAMVVFTGVSGSGKSSLAFGTLYAEAQRRYF
ESVAPYARRLLQQVGAPHVHEITGLPPAVALQQRRGAATSRSTVGTLTTLSNLLRMLFSR
AGTYPAGAARLGAEAFSPNTAAGACPRCHGLAEVHDVSEELMVPDTSLSIRDGAIAAWPG
AWQGANLRSIVTGLGIDVDAPWHTLPARDRDWLLFTDEQPKVLVKPERDRVDHGYHGLFW
SARAHVHHVLNTSKSQMMRDKALRFVRSDVCPACHGTGLQADSLAVTFRGRSIAQTNALS
FTELVALLRPVAELTDAGAATSSADSGEATEVAVRLCADLVARVQVLLDLGLGYLSLGRS
STTLSPGEAQRLRIATQLRSGLFGVVYVLDEPSAGLHPADAEPLLDVLDRLKAAGNSLFV
VEHDLDVVRRADWIVDIGPGAGEGGGHVLYSGPVSGLEHVEGSVTAEHLFGRAEPLERPQ
RTPQGWLHLRGVSRHNLDHVSVDVPLCVLSAVTGVSGSGKSTLVTQVLAELVRRHLGQAP
DDAEESELEIDVDDATGLESFDRLVRVDQRPIGRTPRSNLATYTGLFDAVRKVYAATPQA
RERGYGAGRFSFNVAEGRCETCQGEGFVSVELLFLPGTYAPCPTCHGARYNAETLEVTYR
DKNVAEVLGLSVDEAADFLADVPAAARSLTTLREVGLGYLRLGQPATELSGGEAQRIKLA
TELQRARRGHALYLLDEPTAGLHPADTALLVRQLHRLVDAGNTVVLVEHDLDTIVSADWV
IDLGPGGGDEGGRVVATGTPEEVARVTASATAPYLATRLAALAPDR
NT seq 2481 nt   +upstreamnt  +downstreamnt
gtgccccacgacccgaacgaccccttcgtccgtgtgcgcggcgccagcgagcacaacctc
aagaacgtcgacgtcgacgtcccccgcgacgcgatggtcgtcttcaccggggtctccggg
tcgggcaagtcctccctcgcgttcggcacgctgtacgccgaggcgcagcggcgctacttc
gagtcggtggcgccgtacgcgcgccggctgctgcagcaggtgggtgccccgcacgtgcac
gagatcaccgggctcccgccggcggtggcgctgcagcagcggcgcggcgcggccacctcg
cgctcgacggtcgggacgctgacgacgctgtcgaacctgctgcggatgctcttctcgcgc
gccggcacctacccggccggcgcggcgcggctcggggcggaggcgttctcgccgaacacc
gcggccggggcgtgcccgcgctgccacggcctggcggaggtgcacgacgtcagcgaggag
ctgatggtgcccgacacctcgttgagcatccgcgacggcgcgatcgcggcctggccgggc
gcgtggcagggcgcgaacctgcgcagcatcgtgaccggcctcggcatcgacgtcgacgca
ccgtggcacacgctgccggcccgcgaccgcgactggctgctgttcaccgacgagcagccg
aaggtgctggtcaagcccgagcgggaccgcgtcgaccacggctaccacggcctgttctgg
agcgcccgcgcgcacgtccaccacgtcctgaacacctcgaagagccagatgatgcgcgac
aaggcgttgcgcttcgtccgcagcgacgtctgcccggcctgccacggcaccgggctccag
gccgactcgttggcggtcaccttccggggccggagcatcgcgcagaccaacgcgctgtcg
ttcaccgagctggtcgcgctgctgcgcccggtggccgagctcaccgacgccggcgcggcc
acgtcctcggccgactcgggcgaggcgaccgaggtggcggtgcggctgtgcgccgacctc
gtcgcgcgggtgcaggtgctgctcgacctggggctcggctacctctcgctggggcgcagc
tccacgaccctgtcgccgggtgaggcccagcggctgaggatcgccacccagctgcgctcg
ggcctgttcggggtcgtctacgtgctcgacgagccgtccgcgggcctgcacccggccgac
gccgagccgctgctcgacgtgctcgaccggctcaaggccgcgggcaactcgctgttcgtc
gtcgagcacgacctcgacgtcgtgcgccgcgccgactggatcgtcgacatcgggccgggg
gccggcgagggcggcggccacgtgctctactccggcccggtgtcgggcctcgagcacgtc
gagggctcggtcaccgccgagcacctcttcggacgtgcggagccgctcgagcgaccccag
cggacgccgcagggctggctgcacctgcgcggcgtcagccggcacaacctggaccacgtc
tcggtcgacgtcccgctgtgcgtgctgagcgcggtgaccggcgtctcggggtcgggaaag
tcgaccctggtcacccaggtgctcgccgagctggtgcgccgccacctcggccaggccccc
gacgacgccgaggagagcgagctcgagatcgacgtcgacgacgccaccgggctggagtcc
ttcgaccgtctcgtgcgcgtcgaccagcgtccgatcgggcggacgccgcgctccaacctg
gccacctacaccgggctgttcgacgcggtgcgcaaggtgtacgccgcgaccccgcaggcc
cgcgagcgcgggtacggcgcgggtcgcttctccttcaacgtcgccgagggacgctgcgag
acgtgccagggggaggggttcgtctcggtcgagctgctgttcctgcccggcacctacgca
ccgtgcccgacctgccacggggcgcgctacaacgccgagacgctcgaggtcacctaccgc
gacaagaacgtcgccgaggtgctgggactctccgtcgacgaggccgcggacttcctggcc
gacgtccccgccgcggcgcggagcctgacgacgctgcgcgaggtcggcctgggctacctc
cgcctggggcagccggcgaccgagctcagcggtggcgaggcccagcggatcaagctggcc
accgagctgcagcgggcccggcgcgggcacgcgctctacctgctcgacgagcccaccgcc
ggcctgcaccccgccgacaccgccctgctggtccgccagctgcaccggctggtggacgcc
ggcaacaccgtggtgctggtcgagcacgacctcgacacgatcgtcagcgccgactgggtc
atcgacctgggcccgggcgggggcgacgagggtgggcgggtggtcgccaccgggaccccg
gaggaggtcgcccgggtcaccgccagcgcgacggcgccgtacctggccacgcggctcgcg
gccctcgcccccgaccggtag

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