Nocardioides sp. S-1144: FE634_20635
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Entry
FE634_20635 CDS
T06354
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
noo
Nocardioides sp. S-1144
Pathway
noo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE634_20635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noo03019
]
FE634_20635
03009 Ribosome biogenesis [BR:
noo03009
]
FE634_20635
Enzymes [BR:
noo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FE634_20635
Messenger RNA biogenesis [BR:
noo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FE634_20635
Ribosome biogenesis [BR:
noo03009
]
Prokaryotic type
rRNA helicases
FE634_20635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
adh_short
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCW52230
UniProt:
A0A5B7RD00
LinkDB
All DBs
Position
complement(4286294..4288069)
Genome browser
AA seq
591 aa
AA seq
DB search
MSTEETAEPAITFADLGLGDAVLKSIAAVGYESPSAIQAQTIPPLLEGRDLVGLAQTGTG
KTAAFALPILDRLDIRQKSPQALVLAPTRELALQVCEAFQKYAAGTKGVHVLPVYGGQAY
GIQLSALRRGVHIVVGTPGRIMDHLEKGTLDLSELKFLVLDEADEMLNMGFAEDVETILA
DTPDDKQVALFSATMPAQIRRLSKKYLNNPTEISVKGKTATAANITQRYLICSYPQKVDA
LTRILEVENFEGMIVFVRTKSETELLAEKLRARGFSAMAINGDVAQVQRERTVNQLKSGK
LDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERY
LLKHIEKATRQPLAEMTLPSVEDVNVTRLARFDDAITAALGQTARVEKFRDVIAHYVRNH
DVPEVDVAAALAVVAQGDTPLLLDPADERPARRFDDRPERSAGSGARSDRPERGGRPSRS
GQAMKNYKIQVGKRHKVEPRQIVGAIANEGGLSRGDFGSIKIMPDFSIVELPADLSPETW
KKLESTRISGKLIELTEDRGPSRSPRTSSHDAERPEASSSYKKPRHKKSSD
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagaagagaccgcagagccggccatcaccttcgccgacctcggtctcggcgac
gccgtcctcaagagcatcgccgccgtcggctacgagagcccctcggcgatccaggcccag
accatcccgccgctgctcgagggccgcgacctcgtcggcctcgcgcagaccggcaccggc
aagaccgcggcgttcgcgctgccgatcctcgaccgcctcgacatccgccagaagagcccg
caggcgctggtcctggcgcccacccgcgagctcgcgctccaggtgtgcgaggcgttccag
aagtacgccgccggcaccaagggcgtgcacgtgctgcccgtctacggtggccaggcctac
ggcatccagctgagcgcgctgcgccgcggcgtccacatcgtcgtcggcaccccgggccgg
atcatggaccacctcgagaagggcaccctcgacctctccgagctgaagttcctcgtgctc
gacgaggccgacgagatgctcaacatggggttcgccgaggacgtcgagacgatcctcgcc
gacacccccgacgacaagcaggtcgcgctgttcagcgccaccatgccggcgcagatccgc
cgcctgtcgaagaagtacctcaacaacccgaccgagatctcggtcaagggcaagacggcc
accgccgccaacatcacccagcgctacctgatctgcagctacccgcagaaggtcgacgcc
ctcacgcgcatcctcgaggtcgagaacttcgaggggatgatcgtcttcgtccgcaccaag
agcgagaccgagctgctcgccgagaagctgcgggcccgcgggttctccgcgatggcgatc
aacggcgacgtcgcccaggtgcagcgcgagcgcacggtcaaccagctgaagtcgggcaag
ctcgacatcctcgtcgccaccgacgtcgccgcccgcggcctcgacgtcgagcggatcagc
cacgtcgtcaactacgacatccccaccgacaccgagtcctacgtgcaccggatcggccgc
accggccgcgccggccgctcgggcgacgcgatctccttcgtcaccccgcgcgagcgctac
ctcctcaagcacatcgagaaggcgacccgccagccgctcgccgagatgacgctgccctcg
gtcgaggacgtcaacgtcacccggctggcccgcttcgacgacgccatcaccgccgcgctc
gggcagaccgcgcgcgtcgagaagttccgcgacgtcatcgcccactacgtccgcaaccac
gacgtgcccgaggtcgacgtcgccgcggcgctcgccgtggtggcgcagggcgacaccccg
ctcctgctcgaccccgccgacgagcgccccgcgcgccgcttcgacgaccgtcccgagcgc
tcggccggctccggcgcgcggagcgaccgtcccgagcgcggcggccgtccgagccgctcc
ggccaggcgatgaagaactacaagatccaggtgggcaagcgccacaaggtcgagccgcgc
cagatcgtgggcgcgatcgccaacgagggcgggctctcgcgcggtgacttcggcagcatc
aagatcatgccggacttctcgatcgtcgagctgccggccgacctgtcgccggagacctgg
aagaagctcgagagcacccgcatcagcggcaagctgatcgagctcaccgaggaccgcggc
ccgagccgctccccgcgcacgtcgtcgcacgacgccgagcgcccggaggcctcgtcgtcg
tacaagaagccgcggcacaagaagtcgtccgactga
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