Nocardioides okcheonensis: LN652_04775
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Entry
LN652_04775 CDS
T07822
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03030
DNA replication
noq03430
Mismatch repair
noq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LN652_04775 (dnaE)
03430 Mismatch repair
LN652_04775 (dnaE)
03440 Homologous recombination
LN652_04775 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noq03032
]
LN652_04775 (dnaE)
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_04775 (dnaE)
Enzymes [BR:
noq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LN652_04775 (dnaE)
DNA replication proteins [BR:
noq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LN652_04775 (dnaE)
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LN652_04775 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HHH_3
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
UFN45526
LinkDB
All DBs
Position
complement(1022501..1026061)
Genome browser
AA seq
1186 aa
AA seq
DB search
MSAGSTVNPAGNFVHLHVHTEYSMLDGASLLDGLFTRTSELGMPAIAMTDHGNLHGAYDF
YSKAKKHGVKPIIGIEAYLTPGTPRGERKRIRWGKGDSAEEGGKDVAGGGAYTHMTMWAE
TTEGMHNLFRLASLASIEGYYYKPRMDRELLQRYSKGIIASTGCLSGEIQTRLTLGQYDE
ALRAAGEFQDIFGKDNFYLELMDHGIAAERATREDLVRIAKTLGLPTIVTNDTHYTNPED
ADGQDALICVASGKRLADTNRLKFDGGGYYIKSAAEMRELWSEFPDGCDNTLEIAERCNV
EFTESTGGYMARADVPAGETEESWFRKEVWRGIEARYPGDRLTQEVKDRVEMELGVISQK
GYCGYYLVVADFIQWSKRNGIRVGPGRGSGAGSIAAYALSITDLCPLEHGLFFERFLNPE
RPSMPDFDIDFDDARRGEVIKYVTEKYGTERVAQIATFGRLKAKAAIKDAARVLDHGFAI
SDRITKALPADVMGKGVALKDIFNTEHKRYGEGGEFRALHDSDPDVRTIFHTALGLEGQI
RNWGVHAAGVIMSSEPIIDVVPIMARPQDGAIITQFDYPMCESLGLVKMDFLGLSNLRIL
EDALANIKINRDLDVVLEELPFDDRPTYELMGRGDTLGVFQLDGSGMRALLRSMQPDVFA
DITAVSALYRPGPMGADSHNKYARRKNGREAIEPIHPALAEALEPVLGETYGLIVYQEQV
MAIAQVLAGFTLGAADNLRRAMGKKKKEELDKQYAGFQAGMLERGFPQQAIDKLWEILLP
FSDYAFNKSHSAAYGVITYWTAYLKANYPTEYMAALLTSVKDDKDKMAIYLNECRRMKIQ
VLPPDVNESQANFTPVGHDIRFGLTAVRNVGHNVVAGIVAAREEKGRYTDFNDFMEKVPA
LVCNKRVVESLIKAGAFDDMKHRRRALVAVHETAVDQFVDLKKNEAIGQDSLFGGLSDDE
GGFGVSVTIPDIDDWDKMTLLGHEREMLGLYVSDHPLLGLEHVLSQGTDCTIGQLMLDED
RAHGSMLTVSGLITSVSRKITKRGDPWATITLEDLDGAIEVLLFPSAYTLASTLLVEDQI
VRIKGSLSRDKDQPELRGQEVTAPDLTQGPAGPVVISLPSTRCTPPVVAQLRDVLGTHPG
MTEVQLRLLTRASTKVLRLDDNLRVTPSPALFADLKQLLGPGCLAG
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccggctccacagtcaacccagcgggcaacttcgtgcacctgcacgtgcacacc
gagtactccatgctcgacggggcctcgctcctcgacgggctcttcacccgcaccagcgag
ctcggcatgccggcgatcgcgatgaccgaccacggcaacctgcacggtgcctacgacttc
tacagcaaggccaagaagcacggcgtcaagccgatcatcggcatcgaggcctacctcacc
cccggcacgccgcgcggcgagcgcaagcggatccgctggggcaagggcgactcggccgag
gagggcggcaaggacgtcgcgggcggtggcgcctacacccacatgacgatgtgggccgag
acgaccgagggcatgcacaacctcttccgcctcgcgagcctggcgagcatcgagggctac
tactacaagccgcgcatggaccgcgagctgctccagcgctactccaagggcatcatcgcc
agcaccggctgcctctccggcgagatccagacccggctcacgcttggccagtacgacgag
gcgctgcgcgccgccggcgagttccaggacatcttcggcaaggacaacttctacctcgag
ctgatggaccacggcatcgccgccgagcgggccacgcgcgaggacctggtccggatcgcg
aagacgctcggcctgccgacgatcgtcaccaacgacacccactacaccaaccccgaggac
gccgacggccaggacgccctcatctgcgtcgcctccggcaagcgcctcgccgacaccaac
cggctcaagttcgacggcggcggctactacatcaagtccgcggcggagatgcgcgagctc
tggtcggagttccccgacggctgcgacaacaccctcgagatcgccgagcggtgcaacgtc
gagttcaccgagtcgaccggcggctacatggcgcgcgccgacgtccccgccggggagacc
gaggagtcctggttccgcaaggaggtctggcgcggcatcgaggcccgctaccccggcgac
cggctgacccaggaggtcaaggaccgcgtcgagatggagctcggggtcatctcccagaag
ggctactgcggctactacctcgtggtcgccgacttcatccagtggtccaagcgcaacggc
atccgcgtcggtcccggtcgcgggtccggtgcggggtcgatcgccgcctacgcgctgagc
atcaccgacctgtgcccgctcgagcacggcctgttcttcgagcggttcctcaaccccgag
cgcccctcgatgcccgacttcgacatcgacttcgacgacgcccgccgcggcgaggtgatc
aagtacgtcaccgagaagtacggcaccgagcgcgtcgcgcagatcgccaccttcggccgg
ctgaaggcgaaggccgccatcaaggacgccgcgcgcgtgctcgaccacggcttcgcgatc
tccgaccggatcaccaaggcgctccccgccgacgtgatgggcaagggcgtcgcgctcaag
gacatcttcaacaccgagcacaagcgctacggcgagggcggcgagttccgcgcgctgcac
gactccgaccccgacgtccgcacgatcttccacaccgccctcggcctcgagggccagatc
cgcaactggggcgtccacgccgccggcgtgatcatgtcgagcgagccgatcatcgacgtc
gtgccgatcatggcgcggccgcaggacggcgcgatcatcacgcagttcgactacccgatg
tgcgagtcgctcggcctggtcaagatggacttcctcggcctgtcgaacctgcgcatcctc
gaggacgcgctcgccaacatcaagatcaaccgcgacctcgacgtggtgctcgaggagctg
ccgttcgacgaccggcccacctacgagctgatgggccgcggcgacacgctgggcgtcttc
cagctcgacggctcgggcatgcgcgcgctgctgcgctcgatgcagcccgacgtgttcgcc
gacatcacggccgtctccgcgctctaccgtcccggcccgatgggcgccgactcccacaac
aagtacgcccggcgcaagaacgggcgcgaggcgatcgagccgatccacccggcgctggcc
gaggccctcgagccggtgctgggcgagacctacggcctgatcgtctaccaggagcaggtg
atggccatcgcccaggtcctggccggcttcaccctgggcgccgccgacaacctccgccgc
gcgatgggcaagaagaagaaggaggagctcgacaagcagtacgccggcttccaggccggc
atgctcgagcgcgggttcccgcagcaggcgatcgacaagctgtgggagatcctgctcccg
ttctccgactacgccttcaacaagtcgcactcggccgcctacggcgtcatcacctactgg
accgcctacctcaaggccaactacccgactgaatacatggccgccctcctgacgtccgtc
aaggacgacaaggacaagatggcgatctacctcaacgagtgccgccggatgaagatccag
gtgctgccgcccgacgtcaacgagtcgcaggcgaacttcaccccggtcggccacgacatc
cgcttcggcctcaccgccgtgcgcaacgtcggccacaacgtggtcgccggcatcgtcgcg
gcgcgcgaggagaagggccgctacaccgacttcaacgacttcatggagaaggtcccggcg
ctcgtgtgcaacaagcgcgtcgtcgagtccctcatcaaggccggcgcgttcgacgacatg
aagcaccggcggcgggcgctggtcgcggtccacgagaccgcggtcgaccagttcgtcgac
ctcaagaagaacgaggcgatcggccaggactcgctcttcggcggcctcagcgacgacgag
ggcggcttcggggtgagcgtcaccatccccgacatcgacgactgggacaagatgaccctg
ctcggccacgagcgggagatgctggggctctacgtctccgaccacccgctgctcggcctc
gagcacgtcctgtcccagggcaccgactgcaccatcggccagctgatgctcgacgaggac
cgggcccacggctcgatgctgaccgtcagcggcctgatcacctcggtgagccgcaagatc
accaagcgcggcgacccgtgggccacgatcaccctcgaggacctcgacggtgcgatcgag
gtgctgctgttccccagcgcgtacaccctggcctcgacgctgctcgtcgaggaccagatc
gtccggatcaagggcagcctctcgcgcgacaaggaccagccggagctgcgcggccaggag
gtcaccgcccccgacctgacccagggtccggccggcccggtggtgatcagcctgccctcg
acccgctgcacgccgccggtggtcgcccagctccgcgacgtgctcggcacccacccgggc
atgaccgaggtgcagctgcgcctgctgacccgcgcctccaccaaggtgctcaggctcgac
gacaacctgcgggtcaccccgagccccgcgctgttcgccgacctcaagcagctgctcggc
ccggggtgcctggccggatga
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