Nocardioides okcheonensis: LN652_06075
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Entry
LN652_06075 CDS
T07822
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LN652_06075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
noq03000
]
LN652_06075
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_06075
Enzymes [BR:
noq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LN652_06075
Transcription factors [BR:
noq03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LN652_06075
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LN652_06075
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
UFN45776
LinkDB
All DBs
Position
complement(1284486..1285964)
Genome browser
AA seq
492 aa
AA seq
DB search
MTPTGHLDPDSCYRAVQSRDRRFDGVFYTAVSTTGIYCRPSCPARTPAARNVTFHATAAS
AHAAGYRACKRCLPDATPGSPEWDVAADAAGRAMRLIADGLVDREGVDGLARRVGYTPRH
LGRLLTQELGAAPLALARARRAQSARVLIETTDLPLTDVAFAAGFTSVRQFNETLREIYA
ASPTELRGRRGGADSHGTVTMRLPVRTPFAGARLLDFLAFHVVPGVEAAGPGWYARTLDL
PHAPGTVHVELADLPAGTGTGFVVARFRLQDLRDTAAASERVRRLLDADCDPRAVDEHLR
DDPVIGSLVRATPGLRVPGQVDGDETAFRTVVGQQVSVTGARTVGGRIVAAHGRPVETGV
PGLTHLFPDAATLAEVDPETLPMPRARGRALVGLAAALVAERVVLDRGPDRDDVRRSLLE
LPGIGPWTADYVAMRALGHPDAFLPTDLAVKKVLAGLGGTADDAERWRPWRSYALMHLWN
TLMPATGPTEDD
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgaccggacacctcgacccggactcctgctaccgggccgtccagagccgggac
cgacgcttcgacggcgtgttctacaccgccgtcagcaccaccggcatctactgccgcccc
tcgtgcccggcccgcacgccggccgcccgcaacgtgacgttccacgccaccgcggccagc
gcgcacgccgccggctaccgcgcgtgcaagcgctgcctgcccgacgccacgcccggcagc
cccgagtgggacgtcgccgccgacgccgccgggcgtgcgatgcggctgatcgccgacggg
ctcgtcgaccgcgagggcgtcgacggcctggcccgccgagtcggctacacgccgcgccac
ctcggccggctgctcacccaggagctcggcgccgctccgctcgcactggcccgcgcccgc
cgggcgcagagcgcacgcgtcctcatcgagacgaccgacctgccgctgaccgacgtcgcc
ttcgccgccggcttcacgagcgtgcgtcagttcaacgagacgttgcgcgagatctacgcc
gcctccccgaccgagctgcgcgggcgccgcggcggcgccgactcccacgggacggtcacg
atgcggctcccggtccgcacgccgttcgccggggcccgcctcctcgacttcctcgccttc
cacgtcgtgccgggcgtggaggccgcgggacccgggtggtacgcccgcaccctcgacctg
ccgcacgcccccgggacggtgcacgtcgagctcgcggacctgccggccggcaccgggacc
ggcttcgtggtggcgcggttccggctccaggacctgcgcgacaccgccgccgcgagcgag
cgggtgcgccggctgctcgacgccgactgcgacccccgtgcggtcgacgagcacctgcgc
gacgacccggtcatcgggtccctcgtccgggccacccccggcctgcgggtcccgggacag
gtcgacggtgacgagacggcgttccgcacggtcgtcggccagcaggtcagcgtcaccggg
gcgcgcaccgtcggcggacgcatcgtcgccgcgcacggacgccccgtcgagaccggcgtc
cccggcctcacccacctcttccccgacgcggcgaccctggccgaggtcgacccggagacg
ctgccgatgccccgcgcacgcgggcgggccctcgtcgggctcgccgccgccctcgtcgcg
gaacgggtcgtgctcgaccgcgggccggaccgcgacgacgtacgccgctcgctgctcgag
ctgccgggcatcggcccgtggacggccgactacgtcgcgatgcgtgccctcgggcacccc
gacgccttcctgccgaccgacctcgcggtgaagaaggtgctggccggcctcggcggcacg
gccgacgacgccgagcgctggcggccgtggcgctcgtacgccctcatgcacctgtggaac
acactgatgcccgcgaccgggccgacggaggatgactga
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