Nocardioides okcheonensis: LN652_06695
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Entry
LN652_06695 CDS
T07822
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN652_06695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noq03019
]
LN652_06695
03009 Ribosome biogenesis [BR:
noq03009
]
LN652_06695
Enzymes [BR:
noq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LN652_06695
Messenger RNA biogenesis [BR:
noq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LN652_06695
Ribosome biogenesis [BR:
noq03009
]
Prokaryotic type
rRNA processing factors
LN652_06695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UFN45892
LinkDB
All DBs
Position
complement(1407575..1410973)
Genome browser
AA seq
1132 aa
AA seq
DB search
MLDSDQPDSTTETQAGEVSAAQDTPAAPVVTRRTRASRARKSAPAAADARPTLRPTPPRP
PRRPRRRRPPPSARRPRRRPPSGPPRRRPRRQPATGPDDAADGTPADAPADAAEAAEAAP
AKKAAAKRAPARKTAAKRTTKKAAAAPAVDDAPAADAPDEDSETGHAVLFQAPVVTTTRR
TRKKAAPAPAAVDAGADAATDPADTPADTPAADGASGATKPGAKSGARKSGGRKSGAKKA
AAETTADAAAGTTAGDTDQQAASGQEPADGAAPRSRKRGGRKAAAAAEATEVEEVEEVEA
TDEDETATDADAVDGDATDADADAQADTDTDTDAEDGEQSDDATDGEGGSPRRRRRRGGR
RRRKSSDASGEGSEDGDGDGGDAEASAGSDDASEAGSTGPDQSDAADGSGEGSSRRRRRR
RRAGDDGGGDDDDPNTVTRVRKGRSAEDQITAVAGSTRLEAKKQRRREGREAGRRRAPIV
SEAEFLARRESVDRVMVIRQREDLTQIGVLEDRVLVEHYVARESQTSLIGNVYLGRVQNV
LPSMEAAFIDIGKGRNAVLYAGEVNWSALGHKDGQPRKIESVLTSGQMVLVQVTKDPIGH
KGARLTSQVSLAGRFLVYVPDGTTSGISRKLPDTERNRLKTLLKEIVPDTAGVIVRTAAE
GASEEELTRDVERLKSRWEEIEKKATHKGSGPQLLYGEPDLTLKVVRDLFTEDFSKLVIE
GDDAWDTVRGYVEQVAPDLAERVEKYQRNGAGDVFATYRVEEQISKGLDRKVWLPSGGSL
IIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDM
VLESNRDLVVRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRIGTGLLEAFSENCEHCHGR
GVVVRDQPVDPHQKAEEGEGRRGSRRRGRRGAAGDNGDNGGEQRPAEQSSAAPSPKDVAA
MARHEKPADEPAAEEPTADVVEPVEAEPEQSEPAPAELEQVEPEQVEPEQSEPEQSEAAP
AEPELVEPERPEPEPAPQATEPEQAPGPEKPRVVTRTRRRSASRPAGPPAALPLATATSG
VAGTLPESGLVEPGTAEVEPGATTATDGSVAPAAEASTVEHVPIKRKGSRKR
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgctcgattccgaccagcccgacagcaccaccgagacgcaggccggcgaggtgagcgcg
gcgcaggacacgcccgcggcgccggtcgtgacccgccggacccgcgcctcgcgtgcgagg
aagtccgcccccgccgcggccgacgcccggccgacgctccggccgacgccgccgaggccg
ccgaggcggccccggcgaagaaggccgccgccaagcgcgcgccggccaagaagacggccg
ccaagcggaccgccaagaagaaggccccggcgccagcccgcgaccgggcccgacgacgcc
gcggacggcaccccggccgacgctccggccgacgccgccgaggccgccgaggcggccccg
gcgaagaaggccgccgccaagcgcgcgccggccaggaagacggccgccaagcgcaccacc
aagaaggcggcggccgcgccggccgtcgacgacgcgcccgcggccgacgcccccgacgag
gactccgagaccgggcacgccgtgctgttccaggcgccggtcgtgaccacgacccgacgc
acccgcaagaaggccgcccccgctcccgccgcggtcgacgccggcgcggacgccgcgacc
gacccggcggacaccccggcggacacccctgccgcggacggggcctccggcgccacgaag
cccggtgcgaagtccggtgccaggaagtccggcggcaggaagtcgggtgcgaagaaggcc
gccgcggagaccaccgccgacgccgcagccgggacgaccgcgggcgacaccgaccagcag
gcggcgtccggccaggagcccgccgacggcgcggccccgcgcagccgcaagcggggtggc
cgcaaggctgccgccgcggcggaggccacggaggtcgaggaggtcgaggaggtcgaggcg
accgacgaggacgagaccgccaccgacgcggacgccgtcgacggggacgccaccgacgcg
gacgccgacgcgcaggccgacaccgacaccgacaccgacgccgaggacggcgagcagtcc
gacgacgccaccgacggcgagggcggctcgccgcgccggcgccgccgccgcggcggccgc
aggcgccgcaagtcctccgacgcgtccggcgaggggtccgaggacggcgacggcgacggc
ggtgacgccgaggcgtcggccggctccgacgacgcgtccgaggccggctcgaccggcccc
gaccagtccgacgccgccgacgggtccggcgagggctcctcgcgccgccgccggcgccgg
cgccgcgccggcgacgacggagggggcgacgacgacgacccgaacaccgtcacgcgggtc
cgcaagggtcgcagcgccgaggaccagatcaccgccgtggcggggtcgacgcgcctcgag
gccaagaagcagcgtcgccgcgagggtcgcgaggccggtcgccggcgcgcgccgatcgtg
agcgaggccgagttcctcgcccgccgcgagtcggtcgaccgcgtgatggtcatccgccag
cgcgaggacctcacccagatcggcgtcctcgaggaccgggtgctcgtcgagcactacgtg
gcccgcgagtcgcagacctccctcatcggcaacgtctacctcggccgggtgcagaacgtc
ctcccgtcgatggaggccgcgttcatcgacatcggcaagggtcgcaacgcggtcctctac
gccggcgaggtcaactggtcggcgctcggccacaaggacggccagccccgcaagatcgag
tcggtcctcaccagcggccagatggtgctggtgcaggtcaccaaggacccgatcggccac
aagggcgcccgcctgaccagccaggtcagcctggccggccggttcctcgtctacgtgccg
gacggcaccacgtccgggatctcgcgcaagctgcccgacaccgagcgcaaccggctcaag
accctgctcaaggagatcgtccccgacacggccggcgtcatcgtgcgcaccgcggccgag
ggcgcgagcgaggaggagctgacgcgcgacgtcgagcgcctcaagtcgcgctgggaggag
atcgagaagaaggcgacccacaagggctcgggcccgcagctgctctacggcgagccggac
ctcacgctgaaggtcgtccgcgacctgttcaccgaggacttctccaagctcgtcatcgag
ggtgacgacgcctgggacaccgtccgcggctacgtcgagcaggtcgcccccgacctcgcc
gagcgcgtcgagaagtaccagcgcaacggcgccggcgacgtgttcgcgacctaccgggtc
gaggagcagatcagcaagggcctcgaccgcaaggtgtggctgccctcgggtggctcgctg
atcatcgaccgcaccgaggcgatgacggtcgtcgacgtcaacacgggcaagttcaccggg
tccggcggcaacctcgaggagaccgtcaccaagaacaacctggaggccgcggaggagatc
gtccgccagctccggctgcgcgacatcggcggcatcatcgtcgtcgacttcatcgacatg
gtcctggagtccaaccgcgacctggtggtgcgccgcctcgtcgagtgcctgggccgcgac
cgcacccggcaccaggtcgccgaggtgacctcgctcggcctggtccagatgacccgcaag
cggatcggcaccgggctgctcgaggcgttcagcgagaactgcgagcactgccacggccgc
ggcgtcgtggtccgcgaccagccggtcgacccgcaccagaaggccgaggagggcgagggc
cgtcggggcagccgccgtcgcggccgtcgcggcgccgccggcgacaacggcgacaacggt
ggcgagcagcgtccggccgagcagtcgtcggccgccccgtcgcccaaggacgtcgcagcc
atggcgcgccacgagaagccggccgacgagccggctgccgaggagcccaccgcagacgtc
gtcgagcccgtcgaggccgagccggagcagtccgagcccgccccggccgagcttgagcag
gtggagccggagcaggtggagccggagcagtccgagccggagcagtccgaggccgccccg
gccgagcccgagctggtcgagcccgagcggccggagcccgagccggctccgcaggccacc
gagcccgagcaggcgcccgggccggagaagccgcgggtggtgacgcgtacgcgccgccgc
tccgcgagccgaccggccggcccgccggccgcgctgcccctggcgacggcgacctccggg
gtcgccggcaccctcccggagtccggcctggtcgagcccggcaccgccgaggtggagccc
ggcgccaccaccgcgaccgacggctccgtggcgccggccgccgaggcgtcgacggtcgag
cacgtcccgatcaagcggaagggttcgcgcaagcgctga
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