Nocardioides okcheonensis: LN652_13445
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Entry
LN652_13445 CDS
T07822
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN652_13445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noq03019
]
LN652_13445
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_13445
Enzymes [BR:
noq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN652_13445
Messenger RNA biogenesis [BR:
noq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN652_13445
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LN652_13445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Pribosyltran
ResIII
RecQ_Zn_bind
HEM4
Motif
Other DBs
NCBI-ProteinID:
UFN43056
LinkDB
All DBs
Position
2769430..2771610
Genome browser
AA seq
726 aa
AA seq
DB search
MTTGTDEAVTDEARLAARESAERHLRALVGRDDAVLREDQWSAIEALAVDRRRALVVQRT
GWGKSAVYFVATKLLRERGAGPTVIVSPLLALMRNQIAAAERAGIRAVTINSTNIDQWQP
IHDQINGGEVDVLLVSPERLNNPGFRDEVLPRLAATCGLLVVDEAHCISDWGHDFRPDYR
RLRTLLAELPSGIPVLATTATANARVTSDVAEQLGVRGTPLVEEGAQRLSRDPGSEVLVQ
RGTLDRESLRLGVVQLKTPEQRLAWLADHLAEQPGSGIVYCLTVAATQEVAGYLRDRGLE
VAAYSGQTEADERHALEQALVEGRVKALVATSALGMGFDASLGFVINLGAPSSPVSYYQQ
VGRAGRGTDEATVVLLPQVEDRDIWAYFASLGFPREEQVRETLAALAESDRPLSTATIET
RVELGRNRLESMLKVLDVDGAVQRVQGGWVATGRPWHYDAERYARVAEAREREQQAMLGY
LRTTECRMRYLREQLDDPDATDCGRCDNCGGLSLSTSVSEAAVAEAGDRLSRPGVVLEPR
KMWPTALANLGLDLKGKISDAAEPGRVVARLTDLGHGQALRALFREDTPDGPVPPGLAQA
VMDVMKDWAPQWPSRPDAIVVVESATRPTLARDLADNLSRVMQIPLVGTWAIRDETVPPR
AGQSNSAQRVAAVRRRGGLDAQIPPGATVLLVDDLVATGWTLTVAAAAIRSAGASAVLPL
ALATQG
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgggaccgacgaagccgtcaccgacgaggcgcgcctcgcggcgcgggagtcc
gccgagcgccacctgagggccctcgtcgggcgcgacgacgcggtgctccgcgaggaccag
tggtcggccatcgaggcgctggcggtcgaccggaggcgggcgctggtcgtgcagcgcacc
ggctggggcaagtcggccgtctacttcgtcgccaccaagctgctccgcgagcgcggggcc
ggtccgaccgtgatcgtcagcccgctgctggccctcatgcgcaaccagatcgccgccgcc
gagcgcgccgggatccgggcggtcaccatcaactccaccaacatcgaccagtggcagccg
atccacgaccagatcaacggcggcgaggtcgacgtgctgctggtcagccccgagcggctc
aacaaccccggtttccgcgacgaggtgctgccgcggctcgccgcgacgtgcggcctgctg
gtcgtcgacgaggcgcactgcatctccgactggggccacgacttccgtcccgactaccgg
cgcctccgcacgctgctcgccgagctgccctcggggatcccggtgctggcgaccaccgcc
accgccaacgcgcgcgtcacctccgacgtcgccgagcagctgggggtgcgcggaaccccg
ctggtcgaggaaggcgcgcagcgcctgtcacgagaccccggctcggaggtcctggtccag
cgcggcaccctcgaccgcgagtccctccggctcggcgtggtgcagctcaagacccccgag
cagcgcctcgcctggctcgccgaccacctcgccgagcagcccggctccggcatcgtctac
tgcctcaccgtcgccgccacccaggaggtcgcgggctacctccgcgaccgggggctcgag
gtcgcggcctactccggccagaccgaggccgacgagcggcacgccctcgagcaggcgctg
gtcgaggggcgggtcaaggcgctggtcgccaccagcgccctcggcatgggcttcgacgcc
agcctcggcttcgtcatcaacctcggcgccccgtcgtcgccggtgtcgtactaccagcag
gtcggtcgcgccggccgcggcaccgacgaggcgaccgtcgtgctgctgccccaggtcgag
gaccgcgacatctgggcctacttcgcctcgctggggttcccgcgcgaggagcaggtccgc
gagacgctggcggcgctcgcggagtccgaccggccgctgtccaccgccacgatcgagacc
cgggtcgagctcggccgcaaccggctggagtcgatgctcaaggtgctcgacgtcgacggg
gccgtccagcgggtgcagggtgggtgggtcgccaccgggcggccctggcactacgacgcc
gagcgctacgcccgcgtcgcggaggcccgcgagcgcgagcagcaggcgatgctgggctac
ctccgcaccaccgagtgccgcatgcgctacctccgcgagcagctcgacgaccccgacgcc
accgactgcggacgctgcgacaactgcggcgggctgagcctgtcgacctcggtcagcgag
gccgccgtcgcggaggcgggtgaccggctctcgcgtcccggggtggtgctcgagccgcgc
aagatgtggccgaccgcgctggccaacctcggcctcgacctcaagggcaagatcagcgac
gccgccgagccgggccgggtggtcgcgcggctcaccgacctcggccacgggcaggcgctg
cgggcgctgttccgcgaggacacccccgacgggccggtcccgccgggtctcgcccaggcc
gtgatggacgtgatgaaggactgggccccgcagtggccgagccggcccgacgcgatcgtc
gtcgtcgagtcagcgacccgccccaccctcgcccgcgacctcgccgacaacctctcgcgc
gtcatgcagatcccgctcgtcggcacctgggcgatccgcgacgagacggtcccgccgcgt
gccgggcagtccaactcggcccagcgggtcgccgccgtgcgccgccgcggcggcctcgac
gcccagatcccgccgggtgccaccgtcctgctcgtcgacgacctcgtcgccaccggctgg
accctcaccgtcgcggccgccgcgatccgctccgccggcgcctccgccgtgctgccgctg
gccctcgccacccagggctga
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