Nocardioides okcheonensis: LN652_14295
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Entry
LN652_14295 CDS
T07822
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LN652_14295 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_14295 (recD)
Enzymes [BR:
noq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LN652_14295 (recD)
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LN652_14295 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
UvrD_C_2
AAA_11
Viral_helicase1
RecD_N
Helicase_RecD
UvrD-helicase
PhoH
AAA_22
SH3_13
TraI_hel_assoc_N
AAA_16
SLFN-g3_helicase
AAA_28
Herpes_Helicase
TrwB_AAD_bind
AAA_29
nSTAND3
NTPase_1
AAA_23
FtsK_SpoIIIE
DEAD
CbiA
Motif
Other DBs
NCBI-ProteinID:
UFN43213
LinkDB
All DBs
Position
complement(2933437..2935215)
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AA seq
592 aa
AA seq
DB search
MNDTFEPVDAHDRDLALAAVGTLAAFNAAGVVTAADVHVATTLGRLAGEPDESVLLAVAL
SVRAVRHGSVCLDLAAVPGSLPDVDVPWPEPDGWARAVAASPVVASGLVHVEHGLVYLDR
YHEQETQVLADLGERAAVTHLVDTGLLDAALERVFPDPASAEQRAACRRAATQPTTVITG
GPGTGKTTAVAGLLAVLAEQAEAQGRTLRIALAAPTGKAAARLEQSVRDSAGRFDPVDRA
RLEGATAMTLHRLLRQHPGNSTRFRHHRGNRLPHDLVVVDEASMVSLTMMARLLEATRPE
ARLVLVGDPDQLTSVDAGAVLTDLVRGFEHRADTPVAALRTAHRYGREIGRLAEALRLGD
GDAAIEALRTGGEAVEWVTEADPAGTIRSAVLPHALAVHDAAAAGDPARALAALDRHRLL
CAHRDGPFGVRHWNRRVEQWFTAETGVPVLDPAYLGRPILVQSNDYALGVYNGDTGVIVS
GAAGPRAAIATGVGFQELAPSRLGDVETMHAMTIHKSQGSQADEVTVLLPDEDSRLLTRE
LFYTAVTRAQRKVRVIGSESAVRAAIERQALRASGLRARLSDTRNVADTDPG
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacaccttcgagccggtcgacgcccacgaccgcgacctcgccctcgcggccgtc
gggaccctggccgccttcaacgcggccggcgtcgtcaccgctgccgacgtccacgtcgcc
accaccctcggccggctcgccggcgagcccgacgagtccgtgctcctcgcggtcgcgctg
tccgtgcgggcggtgcggcacggatcggtgtgcctcgacctcgccgcggtccccggctcg
ctccccgacgtcgacgtgccgtggccggagcccgacggctgggcccgggcggtggccgcg
agcccggtggtggccagcggcctggtgcacgtcgagcacgggctggtctacctcgaccgc
taccacgagcaggagacccaggtgctggccgacctcggcgagcgggcggccgtgacccac
ctcgtcgacaccggtctgctcgacgccgccctcgagcgcgtcttccccgacccggcctcc
gcggagcagcgggcggcgtgccgccgggcggccacccagccgacgacggtcatcaccggc
ggccccggcaccggcaagacgacggccgtggccggcctcctcgccgtcctggccgagcag
gccgaggcgcagggccggaccctgcggatcgccctggcggccccgaccggcaaggccgcg
gcccgcctcgagcagtcggtgcgcgactcggccggccggttcgacccggtcgaccgggcc
cggctcgagggcgcgacggcgatgacgctccaccggctcctgcgccagcaccccggcaac
agcacccgcttccgccaccaccgcggcaaccggctcccgcacgacctcgtcgtcgtcgac
gaggcgtcgatggtctcgctgacgatgatggcgcggctgctcgaggccacgcgccccgag
gcccggctcgtcctcgtgggcgaccccgaccagctcacctccgtcgacgccggcgccgtc
ctcaccgacctggtccgcggcttcgagcaccgcgccgacaccccggtggcggcgctgcgc
accgcccaccgctacggccgggagatcggccggctcgccgaggccctccggctcggtgac
ggcgacgccgcgatcgaggcgctgcgcacgggcggcgaggcggtcgagtgggtgaccgag
gcggaccccgccggcaccatccggtcggccgtcctcccccacgcgctcgcggtccacgac
gccgcggccgcgggtgacccggcgcgggcgctcgcggcgctcgaccggcaccgcctgctg
tgcgcccaccgcgacggcccgttcggcgtacgccactggaaccgccgcgtcgagcagtgg
ttcaccgccgagaccggcgtcccggtcctcgacccggcctacctcggccgcccgatcctg
gtgcagtccaacgactacgccctcggcgtctacaacggcgacaccggcgtgatcgtgtcc
ggcgccgcgggcccgcgggccgcgatcgccacgggcgtcgggttccaggagctcgcgccg
tcgcggctcggcgacgtggagaccatgcacgcgatgaccatccacaagtcgcagggcagc
caggccgacgaggtgaccgtgctgctccccgacgaggactcccgcctgctcacccgcgag
ctgttctacaccgccgtcacccgcgcgcagcgcaaggtccgcgtcatcgggtcggagtcg
gcggtgcgtgcggccatcgagcgacaggcgctgcgcgcgagcgggctgcgtgcccggctg
tcggatacccgaaacgtggcagacacagatccgggctag
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