Nocardioides okcheonensis: LN652_15245
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Entry
LN652_15245 CDS
T07822
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
noq
Nocardioides okcheonensis
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noq03032
]
LN652_15245 (topA)
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_15245 (topA)
Enzymes [BR:
noq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LN652_15245 (topA)
DNA replication proteins [BR:
noq03032
]
Prokaryotic type
DNA Topoisomerases
LN652_15245 (topA)
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LN652_15245 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
MarR_2
Motif
Other DBs
NCBI-ProteinID:
UFN43393
LinkDB
All DBs
Position
3124550..3127273
Genome browser
AA seq
907 aa
AA seq
DB search
MAKLVIVESPAKARTIGGYLGKDYVVESSIGHIRDLPNNAADTPAKIKDKPWGRLAVDVD
NGFEPYYVVPRDKKSHIAKLKKLVKEADALYLATDEDREGEAIAWHLLDELKPPKGLPVH
RMVFHEITKPAIIAAVENPREINDDLVEAQEARRILDRLYGYEVSPVLWKKVMSGLSAGR
VQSVATRLVVDRERERMKFKVASYWDLDATFDAGTGHDPRMFPAKLYSVDDVRVARGADF
DNTGELKGRAERAHLSRADAEALAAGLSDTAYDVRSVESKPYRRSPYPPFRTTTLQQEAS
RKLGMSASVTMSVAQRLYENGYITYMRTDSTTLSGAAVGAARDQVRELYGAEYLPDSPRT
YTSKVKNAQEAHEAIRPAGDTFRTPAQTGLSGEQFRLYELIWMRTVASQMKDATGNSVTI
RLGGAAADGRDVVFSASGRTITFHGFLKAYVEDIDDASKRRDDAETRLPNLTEGAAVSVA
TLSPEGHETKPPARYTEATLIKELEDREIGRPSTYASIIGTILNRGYVYKKGTALVPAWL
AFSVVRLLEEHFPRQVSYEFTASMEDVLDDIAGGRRDRVTELGEFYYGAGDVIGLKTLVT
ELGDIDAKEMATFPIGEGIDLRVGRYGPYVEGPGPDGGDAAPVRANVPDDLPPDELTVAK
AKELLANPAGEEQVIGNHPDTGLQIVAKNGRFGPYVTELLPEDAPKSAKPRTGSLFKSMT
LDTVSLEQAVKLLDLPRIVGTDDDGTEITAQNGRYGPYLKKGTDSRSLTSEDQIFDITLD
QAKAIYAQPKQRGRGAATPPLKELGNDPVSGQPVIVKAGRFGEYVTDGEYNATLRKDDTV
ESITLERAAELLAERRERGPAKKAAKKGAKKAPAKKTAAKKTPAKKTAAKKTAAKKTTAK
KTAAKKS
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaagctcgtcatcgtcgagtcgcctgccaaggcccgcaccatcggcggctacctc
ggcaaggactacgtcgtcgagtcctcgatcggtcacatccgtgaccttccgaacaacgcg
gcggacaccccggccaagatcaaggacaagccgtggggccgcctcgcggtcgacgtcgac
aacggcttcgagccctactacgtcgtgccccgcgacaagaagagccacatcgccaagctg
aagaagctggtcaaggaggccgacgccctctacctcgccaccgacgaggaccgcgagggg
gaggccatcgcctggcacctgctcgacgagctcaagccgccgaagggcctcccggtccac
cggatggtcttccacgagatcaccaagcccgcgatcatcgccgcggtcgagaacccgcgc
gagatcaacgacgacctcgtcgaggcacaggaggcgcgccgcatcctggaccgcctctac
ggctacgaggtctccccggtgctgtggaagaaggtcatgtccggcctgtccgccggccgc
gtgcagtcggtggcgacccgcctggtcgtcgaccgcgagcgcgagcggatgaagttcaag
gtcgcctcctactgggacctcgacgccaccttcgacgccggcaccggccacgacccgcgg
atgttccccgccaagctctacagcgtcgacgacgtccgcgtcgcccgcggtgccgacttc
gacaacaccggcgagctcaagggccgggcggagcgcgcccacctgagccgcgccgacgcc
gaggcgctggccgccggcctctccgacacggcgtacgacgtccgctcggtcgagtccaag
ccctaccgccgctcgccctacccgccgttccgcaccacgaccctccagcaggaggcctcg
cgcaagctcgggatgagcgccagcgtgaccatgtcggtcgcccagcgcctctacgagaac
ggctacatcacctacatgcgtaccgactccacgaccctgtcgggcgcggcggtcggcgcg
gcgcgcgaccaggtccgcgagctctacggcgcggagtacctccccgactcgccgcgcacc
tacacgtccaaggtcaagaacgcccaggaggcgcacgaggcgatccgcccggccggcgac
accttccgcacgccggcccagaccgggctgtcgggcgagcagttccgcctctacgagctg
atctggatgcgcaccgtcgcctcccagatgaaggacgccaccggcaactcggtgaccatc
cgcctcggcggtgcggccgccgacggccgcgacgtcgtgttcagcgccagcggccgcacg
atcaccttccacggcttcctcaaggcctacgtcgaggacatcgacgacgcctcgaagcgc
cgcgacgacgccgagacccggctgcccaacctcaccgagggtgcggcggtctccgtggcc
acgctgtcgccggagggccacgagaccaagccgccggcccgctacaccgaggccacgctg
atcaaggagctcgaggaccgcgagatcggccgcccgtcgacctacgcctcgatcatcggc
accatcctcaaccgcggctacgtctacaagaagggcaccgcgctggtcccggcgtggctg
gcgttctcggtggtccggctgctcgaggagcacttcccgcgccaggtgtcctacgagttc
accgcctcgatggaggacgtcctcgacgacatcgccggcgggcgccgcgaccgggtgacc
gagctcggcgagttctactacggcgccggcgacgtgatcgggctcaagaccctcgtcacc
gagctcggcgacatcgacgccaaggagatggcgaccttcccgatcggtgagggcatcgac
ctgcgcgtgggccgctacggcccctacgtcgagggccccggacccgacggcggcgacgcc
gcacccgtgcgcgccaacgtccccgacgacctgccgcccgacgagctcaccgtggccaag
gccaaggagctgctggccaaccccgccggcgaggagcaggtgatcggcaaccaccccgac
accggcctgcagatcgtggccaagaacggtcgcttcggcccgtacgtcaccgagctgctg
cccgaggacgcgcccaagtcggccaagccccgcaccggctcgctcttcaagtcgatgacg
ctcgacacggtcagcctcgagcaggcggtcaagctgctcgacctgccgcgcatcgtcggc
accgacgacgacggcaccgagatcaccgcccagaacggtcgctacgggccgtacctgaag
aagggcaccgactcgcgcagcctgacgtcggaggaccagatcttcgacatcaccctcgac
caggcgaaggcgatctacgcccagcccaagcagcgcgggcgcggcgcggccacgccgccg
ctcaaggagctcggcaacgacccggtctcgggccagccggtcatcgtgaaggcgggtcgc
ttcggcgagtacgtcaccgacggcgagtacaacgcgaccctgcgcaaggacgacaccgtc
gagtcgatcaccctcgagcgcgccgccgagctgctcgccgagcgccgcgagcgcggcccg
gcgaagaaggcggccaagaagggcgcgaagaaggcacccgccaagaagacggccgccaag
aagaccccggcgaagaagacggctgccaagaagacggctgcgaagaagaccacggcgaag
aagacggccgccaagaagtcctga
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