Nocardioides okcheonensis: LN652_18065
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Entry
LN652_18065 CDS
T07822
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03420
Nucleotide excision repair
noq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LN652_18065 (pcrA)
03430 Mismatch repair
LN652_18065 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_18065 (pcrA)
Enzymes [BR:
noq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN652_18065 (pcrA)
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LN652_18065 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
LN652_18065 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_11
AAA_30
DEAD
ResIII
CarD_TRCF_RID
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
UFN43932
LinkDB
All DBs
Position
3712670..3715063
Genome browser
AA seq
797 aa
AA seq
DB search
MSPTDAPADQALFEHRDHPLLDGLNDPQRAAVTHAGAPLLVVAGAGSGKTRVLTRRIAWL
IQERKAHPGSILAITFTNKAAAEMKERVEELVGKRARIMWVSTFHSACVRILRKEIDRLG
FKSNFSIYDAADSKRLMTLVLRDLELDPKRYQPNAVLNWVSDQKNELRDAEDAAKEARNS
FEEAYAKAFTAYQRRLREANALDFDDLIMTTVHLLQAFPDVRENYRRRFRHVLVDEYQDT
NHAQYSLIQQLCGVSMEEPETEVAGERVEPSELMVVGDADQSIYAFRGADIRNILDFEQD
FPDATTILLEQNYRSTQTILTAANSVIGNNRSRKPKRLWSEAGDGERIVGYVSDDEHDEA
RFVSQEIDTLVDDHGVRPADVAVFYRTNAQSRVFEEVFIRTGQPYKVVGGVRFYERKEVR
DALAYLRMLVNTADEISLRRVLNTPKRGIGDRAEACIAALADRDRTTFWEALTRAAEAPG
LATRSLRNIEAFVAMVQELQSMVAADERPDVILESVLERSGYLTELEASDDPQDGTRVEN
LAELVAVAREFAEDPQPGPSADPADIEAGTVAVGLGDFLERVALVADADQIPDAPDGDDS
GVVTLMTLHTAKGLEFPVVFLTGLEDGIFPHQRSLGDQPELEEERRLAYVGLTRAQQRLY
VSRAMVRSAWGAPAHNPASRFLDELPVDLVDWRRTAAEQTRWGRADHTGGSVRMGSPTDA
GRRNFTSAAMRADAAAKAKPAREIPSLAPGDRVVHDSFGMGTVVAVEGVAEKSVASIDFG
SEGVKRLLLRYAPVEKL
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgagccccactgacgcaccggccgaccaggccctcttcgagcaccgcgaccaccccctc
ctcgacggtctcaacgacccgcagcgggccgccgtgacccatgccggcgcgccgctgctc
gtcgtggccggagccggctcgggcaagacccgcgtgctcacccgccgcatcgcctggctc
atccaggagcgcaaggcccatcccgggtcgatcctggcgatcaccttcaccaacaaggcc
gcggccgagatgaaggagcgcgtcgaggagctcgtcggcaagcgcgcccgcatcatgtgg
gtctccaccttccactccgcgtgcgtgcgcatcctgcgcaaggagatcgaccggctcggc
ttcaagtcgaacttctcgatctacgacgccgccgactccaagcggctgatgacgctggtg
ctgcgcgacctcgagctcgaccccaagcgctaccagcccaacgcggtcctcaactgggtc
tcggaccagaagaacgagctgcgcgacgccgaggacgccgccaaggaggcgcgcaactcc
ttcgaggaggcctacgccaaggcgttcaccgcctaccagcggcgcctgcgcgaggccaac
gcgctcgacttcgacgacctgatcatgaccacggtccacctgctgcaggcgttccccgac
gtccgcgagaactaccgccgccggttccgccacgtcctcgtcgacgagtaccaggacacc
aaccacgcccagtacagcctgatccagcagctgtgcggcgtctcgatggaggagccggag
accgaggtcgcgggggagcgcgtcgagcccagcgagctgatggtcgtcggcgacgccgac
cagtcgatctacgccttccgcggcgccgacatccgcaacatcctcgacttcgagcaggac
ttccccgacgccacgacgatcctgctcgagcagaactaccggtccacccagaccatcctc
accgcggccaactccgtcatcggcaacaaccgcagccgcaagcccaagcggctgtggagc
gaggcgggcgacggcgagcggatcgtcggctacgtctccgacgacgagcacgacgaggcc
aggttcgtgagccaggagatcgacaccctcgtcgacgaccacggcgtacgccccgccgac
gtcgcggtcttctaccgcaccaacgcccagtcgcgcgtcttcgaggaggtgttcatccgc
accggccagccctacaaggtcgtcggcggggtccgcttctacgagcgcaaggaggtccgc
gacgccctggcgtacctgcggatgctggtcaacaccgccgacgagatctcgctgcgccgg
gtgctcaacacccccaagcgcggcatcggcgaccgggccgaggcctgcatcgccgcgctg
gccgaccgcgaccggaccaccttctgggaggcgctgacccgcgccgccgaggcgccgggt
ctcgcgacccgctcgctgcgcaacatcgaggcgttcgtcgcgatggtccaggagctgcag
tcgatggtcgcggccgacgagcggcccgacgtgatcctcgagtcggtcctcgagcggtcg
ggctacctcaccgagctcgaggccagcgacgacccgcaggacggcacccgcgtcgagaac
ctcgccgagctcgtcgccgtcgcgcgcgagttcgccgaggacccgcagcccggcccgagc
gccgaccccgcggacatcgaggccggcacggtcgcggtgggcctgggcgacttcctcgag
cgggtggcgctggtcgccgacgccgaccagatccccgacgccccggacggcgacgactcg
ggcgtggtcacgctgatgaccctccacaccgcgaagggcctggagttcccggtcgtgttc
ctgaccggtctcgaggacgggatcttcccccaccagcgctcgctgggcgaccagcccgag
ctggaggaggagcgtcgcctggcctacgtcgggctcacccgcgcgcagcagcggctctac
gtctcgcgggcgatggtccgctccgcgtggggcgccccggcccacaacccggccagccgg
ttcctcgacgagctgcccgtcgacctcgtcgactggcgccgcaccgccgccgagcagacc
cgctggggccgcgccgaccacaccggcggctcggtccggatgggcagcccgaccgacgcc
ggccgccgcaacttcacgtcggccgcgatgcgcgccgacgcggccgccaaggccaagccg
gcccgggagatcccgagcctggcccccggcgaccgggtcgtccacgactcgttcgggatg
ggcaccgtggtcgcggtcgagggggtcgcggagaagtcggtcgcctcgatcgacttcggc
tccgagggcgtcaagcgcctgctgctgcgctacgcgccggtcgagaagctctag
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