Nocardioides okcheonensis: LN652_19995
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Entry
LN652_19995 CDS
T07822
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
noq
Nocardioides okcheonensis
Pathway
noq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN652_19995 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noq03021
]
LN652_19995 (rho)
03019 Messenger RNA biogenesis [BR:
noq03019
]
LN652_19995 (rho)
Transcription machinery [BR:
noq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LN652_19995 (rho)
Messenger RNA biogenesis [BR:
noq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LN652_19995 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Motif
Other DBs
NCBI-ProteinID:
UFN44300
LinkDB
All DBs
Position
4106616..4108511
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AA seq
631 aa
AA seq
DB search
MTETPSAPAENVDSTTPDGPARKAARKSGGLSSMLLADLKSMAAGLGVAGAGSMKKAQLV
EAIKAAQSGGPKQAERREAPQEKAPEKAPEKAPEKAPQEDEPVTRTTVRTRTRRQRQAEQ
AGESAEPAREQAEQKSEQKSEQQDRKGDKQDQKQQDQKQQDQKQDRKQQDQKQKQGKQQD
RQQDRQQDRQQDRQQDRQQDRQQDRQQQDRQQDRQQDRQQQDQKQAQQQSQQQSQQQFDD
DEDGEGGSRRNRRRRGRDRTAVRTGGRNEPDTTILEDDVLVPAAGILDVLENCAFVRTSG
YLPGTEDVYLSLSMVRKYHLRRGDAVVGQVRQPREGERREKFNPMVRIDSVNGTEAEGAK
ERPEFGAATPVHPHQRLRLATDTDLVGKVIDIAAPVGKGQRGLVLTPPRTGATSLLQSVA
QSVTTNNPECHVMVVLVDARPEEVTDFQRAVKGEVVASTFDRQPADHTLVAELAIERAKR
LVELGHDVVVLIDSLTRLGRAYNLAAPASGRVLGGLVDASAVHPVKEFFGAARKVEDGGS
LTILATVAVGSGSATDEFFLEELAGTENLELVLSAEKAAKGIVPAVDVAASGTRHEDRLL
APAEGAVVGDLRTQLAAAETPQAVAKVFGSR
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgagactccctctgctccggcggagaacgttgactccaccacccccgacggcccg
gccaggaaggccgccaggaagtccggcgggctgagctcgatgctgctcgccgacctgaag
tcgatggccgccggcctcggggtcgccggcgccggctcgatgaagaaggcccagctggtc
gaggcgatcaaggccgcgcagtccggcgggccgaagcaggccgagcgccgcgaggcgccc
caggagaaggctccggagaaggccccggagaaggccccggagaaggccccgcaggaggac
gagccggtcacccggaccaccgtccgcacccgcacccggcgccagcgccaggccgagcag
gcgggcgagtccgccgagccggcgcgcgagcaggctgagcagaagtccgagcagaagtcc
gagcagcaggaccgcaagggcgacaagcaggaccagaagcagcaggaccagaagcagcag
gaccagaagcaggaccgcaagcagcaggaccagaagcagaagcagggcaagcagcaggac
cggcagcaggaccggcagcaggaccggcagcaggaccggcagcaggaccggcagcaggac
cggcagcaggaccgccagcagcaggaccggcagcaggaccgccagcaggaccgccagcag
caggaccagaagcaggcccagcagcagtcccagcagcagtcccagcagcagttcgacgac
gacgaggacggcgagggcggcagccgccgcaaccgccggcgccggggccgcgaccgcacc
gcggtgcgcacgggcgggcgcaacgagcccgacaccacgatcctcgaggacgacgtcctg
gtgccggccgccggcatcctcgacgtgctggagaactgcgccttcgtgcgcacctccggc
tacctccccggcaccgaggacgtctacctgtcgctctcgatggtccgcaagtaccacctg
cgtcgcggcgacgccgtcgtcgggcaggtgcgccagccccgcgagggcgagcgccgcgag
aagttcaacccgatggtccgcatcgacagcgtcaacggcaccgaggccgagggcgccaag
gagcgcccggagttcggcgccgcgaccccggtccacccgcaccagcggctgcggctggcc
accgacacggacctcgtcggcaaggtgatcgacatcgcggcgcccgtcggcaagggccag
cgcggcctggtcctgacgccgccgcggaccggggcgacgtccctgctgcagtcggtggcc
cagtcggtcacgaccaacaaccccgagtgccacgtgatggtggtgctggtcgacgcccgc
cccgaggaggtcaccgacttccagcgcgcggtcaagggcgaggtcgtcgcgtccacgttc
gaccggcagccggccgaccacaccctcgtcgccgagctcgccatcgagcgggccaagcgg
ctcgtcgagctgggtcacgacgtcgtcgtgctgatcgactcgctcacccgcctgggccgg
gcctacaacctcgccgccccggcgagcggccgggtcctgggcgggctcgtggacgcctcc
gcggtgcacccggtcaaggagttcttcggtgccgcccgcaaggtcgaggacggcggctcg
ctgaccatcctcgccaccgtcgccgtgggcagcggctcggcgaccgacgagttcttcctc
gaggagctcgccggcaccgagaacctcgagctcgtgctgagcgcggagaaggcggcgaag
ggcatcgtgcccgccgtcgacgtcgccgcctccggcacccggcacgaggaccggctgctc
gcgccggccgagggcgcggtcgtcggagacctccgcacccagctcgcggccgccgagacg
ccgcaggccgtcgcgaaggtcttcggctcgcgctga
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