Nocardioides okcheonensis: LN652_20475
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Entry
LN652_20475 CDS
T07822
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03030
DNA replication
noq03430
Mismatch repair
noq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LN652_20475 (holA)
03430 Mismatch repair
LN652_20475 (holA)
03440 Homologous recombination
LN652_20475 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noq03032
]
LN652_20475 (holA)
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_20475 (holA)
Enzymes [BR:
noq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LN652_20475 (holA)
DNA replication proteins [BR:
noq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LN652_20475 (holA)
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LN652_20475 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
HAD
DNA_pol3_gamma3
AA_kinase
Motif
Other DBs
NCBI-ProteinID:
UFN44390
LinkDB
All DBs
Position
4201320..4202306
Genome browser
AA seq
328 aa
AA seq
DB search
MARTPSAAQVLGHVVLVTGKEEYLSARTVASVRDAVRAHDGDAEMAESQASDLTLASLGE
MSAPSLFSSIRCVVVRGLEDLPDESVDGLLGYCAAPSDDVALVLVHGGGQKGSGVLTKLR
KLAAVTEVKSEEVKASEMPAFVTSEVASHGARITPDAATFLVQAIGSDLRSLAAAADQLT
NDFPDEQLTIEKVQRYFGGRAEAKSFTVADAAFAGRRAQALEELRWALDAGTATVLVTSA
MAASARSIARYLGAPRGARDGDLARELGVPPWKVRTVRDQSRAWSPDAIAAAVQAVAAAD
ADIKGRAHDASYTLERLVLTVAGLRETR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcaccccctccgccgctcaggtcctcggccacgtcgtcctcgtgacgggcaag
gaggagtacctctcggcgcgcacggtggcgtcggtgcgcgacgccgtccgggcccacgac
ggcgacgccgagatggccgagtcgcaggcctccgacctcaccctggcctcgctgggggag
atgtcggcgccgtcgctcttctcctcgatccgctgcgtggtcgtgcgcgggctggaggac
ctccccgacgagtccgtcgacggcctcctgggctactgcgccgccccgtccgacgacgtc
gcgctggtcctcgtccacggcggcgggcagaagggcagcggcgtgctcaccaagctgcgc
aagctcgccgcggtcaccgaggtgaagtcggaggaggtcaaggcctccgagatgccggcc
ttcgtgacctccgaggtcgcctcccacggcgcgcgcatcacccccgacgcggcgacgttc
ctcgtccaggccatcggcagcgacctgcgttcgctggccgcggccgccgaccagctcacc
aacgacttccccgacgagcagctcaccatcgagaaggtccagcgctacttcggcggtcgg
gcggaggcgaagtccttcacggtcgccgacgccgcgttcgccggccggcgcgcgcaggcg
ctggaggagctgcgctgggcgctcgacgccggcaccgcgacggtgctggtcacctcggcg
atggcggcgtccgcgcgcagcatcgcgcgctacctcggcgccccgcgcggcgcgcgcgac
ggagacctggcccgcgagctcggcgtcccgccgtggaaggtgcgcacggtgcgcgaccag
tcacgcgcgtggagccccgacgcgatcgccgccgccgtgcaggcggtcgccgccgccgac
gccgacatcaagggccgcgcgcacgacgcgtcctacaccctcgagcggctcgtgctcacc
gtcgccgggctgcgcgagacgcgctga
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