Nocardioides okcheonensis: LN652_21560
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Entry
LN652_21560 CDS
T07822
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
noq
Nocardioides okcheonensis
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noq03021
]
LN652_21560
Transcription machinery [BR:
noq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LN652_21560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
MarR_2
HTH_23
HTH_24
HTH_Crp_2
MarR
Sigma70_ECF
HTH_3
HTH_1
HTH_5
HTH_AsnC-type
Rv2175c_wHTH
HTH_IclR
DUF7343
HTH_Tnp_4
DUF1492
HTH_31
Motif
Other DBs
NCBI-ProteinID:
UFN44595
LinkDB
All DBs
Position
complement(4416825..4417649)
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AA seq
274 aa
AA seq
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MDSRTSTPARPPARSDGGRERTTERLLARLHDPSLHLDDGERKDLADAVVVANLPVARSI
AGRFARRGCPLEDLEQAASLALVRAVQRYDPGAGHHFMSYAVPCITGEVKRHFRDRGWMV
RPPRPVQELQPLVERELLRHDPDTGRSPGHAEVAARLGVPVAGVRQALLARGCFSPASLD
KPVAGHDDVLVRDTLVSPHAERDYLAAEARAVLEPVLDILDEPERRLLQMRFVDELTQTE
IGAALGMSQSHVSRQVNALLKRLRHALEHQSRAA
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atggactcgcgcacgtccacgcctgcccgcccgcccgcccgctccgacggggggcgggag
cgcaccaccgaacggctgctggcccggctccacgacccgtcactgcacctcgacgacggg
gagcgcaaggatctggccgatgcggtcgtggtcgccaacctgccggtcgcgcgcagcatc
gcgggccggttcgcccggcgcggctgcccgctggaggacctcgagcaggccgccagcctg
gcgctggtgcgtgcggtgcagcgctacgaccccggcgccggccaccacttcatgtcctac
gccgtcccgtgcatcaccggcgaggtcaagcggcacttccgcgaccgcggctggatggtg
cggcccccgcggccggtgcaggagctccagccgctggtcgagcgcgagctgctccgtcac
gacccggacacgggccgctcgccgggccacgccgaggtcgccgcacgcctcggcgtgccg
gtggcgggggtccggcaggcgctgctcgcccgcggttgcttctcccccgcgtccctcgac
aagcccgtggccggccacgacgacgtgctcgtccgcgacacgctcgtgtcgccgcacgcc
gagcgggactacctcgctgccgaggcccgggccgtcctggagcccgtcctggacatcctg
gacgagcccgagcgacggctcctgcagatgcggttcgtcgacgagctgacccagaccgag
atcggcgccgcgctcgggatgagccagtcgcacgtctcccgccaggtcaacgcgctgctc
aagcggctgcgccacgccctcgagcaccagtcacgggccgcctga
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