Novosphingobium sp. EMRT-2: FA702_01840
Help
Entry
FA702_01840 CDS
T06038
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nor
Novosphingobium sp. EMRT-2
Pathway
nor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FA702_01840 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nor03400
]
FA702_01840 (mfd)
Enzymes [BR:
nor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FA702_01840 (mfd)
DNA repair and recombination proteins [BR:
nor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FA702_01840 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
SecA_DEAD
Cas3-like_C_2
AAA_30
AAA_16
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
QCI92423
UniProt:
A0A4D7D752
LinkDB
All DBs
Position
complement(343224..346745)
Genome browser
AA seq
1173 aa
AA seq
DB search
MPDLNRILSATVPLTLASVARGAQPLVLGDLARAAKGRAVFIAPDDAAMRAIAESAPFFA
PDLEVVEYPAWDCLPFDRASPALSVSARRLAALQKLQQKRNGPQLVVTTINAVLQRALTP
FRIRESTRLLTPGVEIGRESLIALLQRQGYSRTDTVVDAGEYAVRGSIFDIFPSGLDHGL
RLDFFGDELETLRLFDPNTQRSVQPVETHLLLPASEALLDEDSIKRFRGRYRELFGANAT
GDPLYQAVSDGRRLAGMEHWLPLFEDRLVTLFDHLTDDDLVLIDGAAAKAAETRLADIAD
YHQARIDSAQRSPGTYRPLAEDALYLSRDEFDRALAGWPVHRTSIFAEPESGQVVDFGFS
SARDFTPERAQASSGQAGAASNGNIYEAAAKHLAALGTRGLKPVIAAYTAGSRARLASLL
GEAGKTAPALAESWQEALGIAASGRPVAVVLPLEQGFANAELELLTEQDILGDRLVRRKK
KRKDADAFLAELSALNPGDLVVHMDHGIGRYEGLEAIKVGDSPHDCVQLTYAGGDKLYIP
VENLDVLSRYGNESDGVALDKLGGEAWQRRKARMRERILEMAGQLMATAAARALRQADVL
PTDPASYGPFVDRFPWDETEDQERAIDDVLGDLVEGKPMDRLVCGDVGFGKTEVALRAAF
VAAMAGKQVAVIAPTTLLARQHYANFVERFSGFPLNIGRLSRLVPEKEARETRAGLADGT
TDIVIGTHALLSKQVQFKRLGLVIVDEEQRFGVGHKEKLKELKTDVHVLTLTATPIPRTL
QMAMSGLRELSTIQTPPVDRLAVRTYVMPWDDVVMREALLREHQRGGQSFIVVPRIADMP
ELEEWLRLNVPEIRFVTAHGQMSPTEVEDRMGAFYEKKYEVLLSTTIVESGIDIPSANTI
VLHRADRFGLAQLYQLRGRVGRGKLRAYAYLTYPEDMALSEVAEKRLKVLGDLDSLGAGF
QLASHDLDLRGAGNLLGDEQSGHIKEVGFELYQSMLEDAILAAKAGDIGLAREREALSPQ
ITVDAPIMIPEDYVPDLAVRMALYRRMNDAEGADAVEALAAEMIDRFGPLPGPTQNLLKL
IEIKRQAIAAQIAKIDVGQKGALVSFHNDSFPDPAGLVAYVERLKGTAKLRPDMKLVISR
AWGNAEARLNGLVQLTKGLSAIARRATAQKRCD
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatctgaaccgcatcctttccgccaccgtcccgctgacgcttgcctccgtcgcg
cgcggggcgcagccgctggtgctgggcgatctggcgcgcgcggcgaaggggcgcgcggtg
ttcatcgcgccggacgacgcggcgatgcgcgcgatcgccgaaagtgcgcccttcttcgcg
cccgaccttgaagtcgtcgaatacccggcgtgggactgcctgccattcgaccgcgcctcc
cccgcgctctcggtcagcgcgcggcggctggcggcgctgcagaagctgcagcagaagcgc
aacgggccgcagctggtcgtcacgacgatcaacgccgtcctgcaacgcgcgctgacgccg
ttccgcatccgcgaatccacccgcctgctcacgccgggcgtggagatcgggcgcgagagc
ctgatcgcgctgctccagcggcagggctattcgcggacggacacggtggtcgatgccggc
gaatatgccgtgcgcggatcgatcttcgacattttccccagcgggctcgaccacgggttg
cggctcgacttcttcggcgacgagctggaaacgctgcggctgttcgatccgaacacgcag
cgcagcgtgcagccggtggaaacgcatctgctgctgcccgccagcgaggcgctgctcgac
gaggacagcatcaagcgttttcgcgggcgctatcgcgaactgttcggcgccaacgcaacc
ggcgatccgctctatcaggctgtcagcgatggccgtcggctggccgggatggagcactgg
ctgccgctgttcgaggaccggctggtcacgctgttcgaccatctgaccgacgacgacctc
gtgctgatcgacggcgcggcggccaaggcggcggaaacgcggttggccgacatcgccgac
taccaccaggcgcggatcgacagcgcgcagcgcagtccgggcacctatcgcccgctggcc
gaggatgcgctgtacctctcgcgcgacgagttcgaccgggcgctggccggctggccggtc
caccgcacgtcgatctttgccgaacctgaatcggggcaggtcgtcgatttcggcttttcc
agcgcgcgcgatttcacgcccgagcgggcgcaggccagctctggccaagcgggcgcggcg
tcgaacggcaacatctacgaggcggcggcgaagcacctggccgcgctgggcacgcgcggg
ctcaagccggtcatcgccgcctataccgccggatcgcgcgcgcgtctggcctcgctgctg
ggcgaagccggcaagacggcgcccgcgctggcggaaagctggcaggaagcgctgggcatc
gccgcctccggtcgacccgtcgccgtggtgctgccgctggagcagggcttcgccaacgcc
gaactggaactgctgaccgagcaggacatcctcggcgaccggctcgtgcgccgcaagaaa
aagcgcaaggacgccgacgcgttcctggccgaactttccgcgctcaatcccggcgatctg
gtggttcacatggaccacggcatcggccgctatgaagggctggaagcgatcaaggtgggc
gacagcccgcacgattgcgttcagctgacgtacgccggcggtgacaagctctacatcccg
gtcgagaacctcgacgttctttcgcgctacggcaacgagagcgacggcgtcgcgctcgac
aagctgggcggcgaggcgtggcagcggcgcaaggcgcggatgcgcgagcgcatcctggag
atggccgggcagctgatggccaccgccgcggcgcgcgccctgcggcaggcggacgtgctt
ccgaccgatcccgccagctacggccccttcgtcgaccgcttcccgtgggacgagaccgag
gaccaggaacgcgccatcgacgacgtgctgggcgatctggtcgaaggcaagccgatggac
cggctggtctgtggcgacgtcggcttcggcaagaccgaagtcgcgctgcgcgctgccttc
gtcgcggcgatggccggcaagcaggtcgccgtgatcgcgccgacaacgctgctggcgcgc
cagcattacgccaacttcgtcgaacgcttctccggcttcccgctcaacatcggccgcctt
tcgcgcctcgtccccgaaaaggaagcgcgcgagacccgcgccgggctggccgacggcacg
accgacatcgtgatcggcacgcacgcgctgctgtcgaagcaggtgcagttcaagcggctg
ggcctggtgatcgtggacgaggaacagcgcttcggcgtgggccacaaggaaaagctcaag
gagctgaagaccgacgtccatgtcctgacgctgaccgccacgccgatcccgcgcaccctg
cagatggcgatgtccggcctgcgcgaactgtccacgatccagaccccaccggtcgatcgc
ctggccgtccgcacctatgtcatgccgtgggacgacgtagtgatgcgcgaggcgctgctg
cgcgagcaccagcgcggtgggcagagcttcatcgtggtgccgcgcatcgccgacatgccc
gagctggaggaatggctgcggctcaacgtgcccgagatccgcttcgtcaccgcgcacggc
cagatgagcccgaccgaggtcgaggaccggatgggcgcgttctacgagaagaagtacgaa
gtgctgctttcgaccaccatcgtcgaaagcgggatcgacatccccagcgccaacaccatc
gtcctgcaccgcgccgaccgcttcgggctggcgcagctgtaccagcttcgtggccgggtg
gggcgcggcaagctgcgcgcctatgcctatctcacttatcccgaggacatggccctgtcc
gaagtcgcggaaaagcggctgaaagtgctgggcgatctcgattcgctcggcgccggcttc
cagctcgccagccacgacctggacctgcgcggcgcaggcaacctgctgggcgacgagcaa
tcgggccatatcaaggaagtgggcttcgaactctaccagtcgatgctggaagacgcgatc
ctcgccgccaaggcgggcgacataggcctggcgcgcgaacgcgaggcgctgagcccccag
atcacggtcgatgcgccgatcatgatccccgaggactacgtgcccgatctggcggtgcgc
atggcgctctatcgccgcatgaacgatgccgaaggcgcggacgcagtggaagcactggcg
gccgaaatgatcgaccgcttcggccccctgcctggccccacacagaacctgctcaagctg
atcgagatcaagcggcaggccatcgcggcgcagatcgccaagatcgacgtcggccagaag
ggcgcgctcgtctcgttccacaacgacagcttccccgatccggcgggcctcgtcgcctat
gtcgaacggctgaagggcaccgccaagctgcggccggacatgaagctggtgatttcgcgc
gcatggggcaacgccgaagcgcggctcaacgggctggtgcagctgaccaagggcctgtcc
gcgatcgcccggcgcgcgacggcacaaaagcgctgcgactag
DBGET
integrated database retrieval system
