Novosphingobium sp. EMRT-2: FA702_02650
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Entry
FA702_02650 CDS
T06038
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
nor
Novosphingobium sp. EMRT-2
Brite
KEGG Orthology (KO) [BR:
nor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nor03400
]
FA702_02650 (addB)
Enzymes [BR:
nor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FA702_02650 (addB)
DNA repair and recombination proteins [BR:
nor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FA702_02650 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QCI92559
UniProt:
A0A4D7DA76
LinkDB
All DBs
Position
complement(510602..513595)
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AA seq
997 aa
AA seq
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MSDRTPRTGPKVWSIAAHRGFADALVAGLIPRYREDGFGLARLLLLLPSRRAVRTVTEAF
VRASGEGGLLLPRMAVVGDLDLDETLGPLLDPLGPGAAVPPASDPVFRLLRIAEMLRAEP
ETGNLGEAGLLRQARSIVRSMDRMAVEDVAPEKLLDEAVIGAVGDLSQHWTDSTRLFAKV
LFRWRAEQEARGEIDAPERRNRLLDHAARVWRDHPPAHPVIAAGVTSAAPAIARLLRTVA
DLPDGGVILPDLDLALEEPVWEALGAAGMPEEPGGPPFARGDVVTHPQYHLKLLLNRMGV
ARGEVQPWHRAGLAAAPPERSKAISNLFLPPEASTVWVSLPAERRRLSGVRTMETAHPEE
EAQAVSVLIQQALAEPERRVALVTPDRALAVRVVAHLARWNIAADDSAGRPLPQTPAGRL
FLQIAEVMAERAAPVPLLALLAHPLVMAGEGRAAWLERVRQLDLVLRGPRPGPGLEAVRA
AVKEQDRRYPGLFDWWDEAEALLAPLLLFDGALPLGAALALLAETAEALCGEGIWAQPDG
RSLSQFVQQWSDAAGEVVLETDPVDLPVLLRDALDEVAVRPPYGGHPRLSIYGLLEARMS
RADLVICAGLTEGSWPGAPAPDPLLAPPVLRMLGIPGADFRIGLAAHDLAAALGAPEVVL
SHAQRDAAGPAIPSRFLMRIRAMLGRELRHEHDAVRFARALDDAPPAPAYPRPEPMPSAE
QRRVPIAVTALDRLRGDPYQFYASAVLGLRALDPIDADPTPAWRGTAVHAILEAWHDAGA
RPGELIPLAERALAEMSAHPFMRGLWRPRLLAGLGWIEAEQDRLLGEGREVLAWEKKGEI
MVDGVRIHGRADRIDRLADGTLAVVDYKTGTPPSARMVEEGFALQLGLVGLIAQGGGIEG
VSGTPTRFEYWSLARNRERGFGFMDEPVLEGRRKSGIPREEFLDRTRDYLEEAIARWILG
SDPFTARLNPDLPGYSDYDQLMRLDEWQGRGRAGDAA
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacagaacgccgcgaacggggccgaaagtctggtcgatcgcggcgcaccggggc
tttgccgatgcgctcgtcgccggcctgatcccacgctatcgcgaggacggtttcggtctg
gcgcgcctgttgctactgttgccgagccgccgcgccgtgcgcaccgtgaccgaagccttc
gtgcgcgccagcggggaaggcgggctgctgctgccgcgcatggcggtggtgggtgatctc
gatctcgacgaaacgctggggccattgctcgacccgctggggccgggcgcggcagtgccg
ccggcgagcgatccggtgtttcgcttgttgcgcatcgccgaaatgctgcgcgcggagccg
gagaccggcaatctgggcgaggccggactgctgcggcaggcgcggtcgatcgtgcgcagc
atggaccggatggcggtggaggacgtcgcgcccgaaaagctgctggatgaagcggtgatc
ggcgcggtgggcgatctttcgcagcactggacggacagtacgcggctgttcgcgaaagtg
ctgttccgctggcgcgccgagcaggaggcgcggggcgagatcgacgcgcccgaacggcgc
aaccgcctgctcgatcacgcggcgcgggtatggcgggaccatccgccggcgcatccggtg
atcgccgccggggtgacctcggccgcgcccgccatcgcgcggctgttgcgcacggtggcc
gatttgccggacggcggcgtgatcctgcccgatctcgatctcgcgctggaggaaccggtg
tgggaagcgctgggcgcggcgggcatgcccgaggagccgggcggcccgccgttcgcgcgg
ggcgatgtggtgacccacccgcagtaccatctcaagctgttgctcaaccgcatgggcgtg
gcgcgtggcgaggtgcagccctggcaccgcgccgggctggctgcggctccgcccgaacgt
agcaaggcgatttccaacctgttcctgccgcccgaagccagcacggtgtgggtgagcctg
ccggcggagcggcggcggctttcgggcgtgcgcacgatggaaaccgcccacccagaggaa
gaggcgcaggcggtctccgtactgatccagcaggcgctggcggagccggagcgccgcgtc
gcgctggtgacgccggaccgggcgctggcggtgcgtgtggtcgcgcatctggcgcgctgg
aacatcgcggcggacgattccgccggccgtcccctgccccagacgccggcggggcggctg
ttcctgcagatcgccgaagtcatggccgaacgggccgcgccggtgccgctgctggcgctg
ctggcgcatccgctggtgatggcgggcgaaggacgcgcggcgtggctggagcgcgtgcgc
cagctcgatctggtgctgcgcgggccgcgccccgggccggggctcgaagctgtgcgcgcg
gcggtgaaggagcaggaccggcgctatcccggcctgttcgactggtgggacgaggcggag
gcgctgctggccccgttgctgctgttcgatggcgcgctgccgctgggcgcagcgttggcg
ctgctggccgagaccgccgaggcgctgtgcggcgagggcatctgggcgcagccggacggg
cgcagcctgtcgcagttcgtgcagcaatggagcgacgccgccggcgaggtcgtgctggag
accgatcccgtcgatctgcccgtgctgctgcgcgacgcgctggacgaagtggcggtgcgt
ccgccctatggcgggcatccgcgcctttcgatctacggcctgcttgaagcgcggatgagc
cgggcggatctggtcatctgcgcgggtctgaccgaagggtcatggcccggcgcgcccgcg
cccgatccgttgctggcgccgccggtgctgcggatgctcggcattcccggcgcggatttc
cgcatcggcctggccgcgcacgatctggccgccgcgctgggcgcgcccgaggtggtgctg
agccacgcgcagcgcgatgccgccggcccggcgatcccctcgcgcttcctgatgcgcatc
cgcgccatgttggggagggaactgcggcacgagcacgacgcggtgcgctttgcccgcgcg
ctcgacgatgcgccgcccgcgcctgcctatccccggcccgaaccgatgccatcggccgaa
cagcgccgggtgccgatcgctgtcaccgcgctcgaccggctgcggggagatccctaccag
ttctacgcctccgccgtcctcggcctgcgcgcgctcgatccgatcgacgcggaccccacg
cccgcgtggcgcggcacggcggtccacgcgattctggaggcatggcatgatgccggcgcc
cggccaggcgagttgatcccgctggccgaacgcgcgctggcggagatgagcgcgcatccg
ttcatgcgcgggctgtggcggccgcgcctgctggcggggctgggctggatagaagcggaa
caagaccgcctgctgggcgaggggcgcgaagtccttgcctgggagaaaaagggcgaaatc
atggtggatggcgtgcgcatccatggccgcgccgaccggatcgaccgcctggccgacggc
acgctggcggtggtcgattacaagaccggcacaccgccatcggcgcggatggtagaggaa
ggcttcgcgctccagctcggccttgtcggcctgatcgcgcagggcggcgggatcgaagga
gtgagcggcacgccgacgcggttcgaatactggtcgctggcgcgcaaccgggaacgtggc
ttcggtttcatggatgagccggtgctggaaggccgccgcaagtccggcatcccgcgcgag
gaattcctcgaccgcacgcgcgattatctggaagaggcgatcgcgcggtggatactcggc
agcgatccgttcacggcgcggctcaatcccgatcttccgggctattcggactatgaccag
ttgatgcggctggacgaatggcagggccgcggccgcgcgggggatgcggcatga
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