Novosphingobium sp. EMRT-2: FA702_04580
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Entry
FA702_04580 CDS
T06038
Name
(GenBank) conjugal transfer protein TraD
Organism
nor
Novosphingobium sp. EMRT-2
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Gene cluster
GFIT
Motif
Pfam:
TrwB_AAD_bind
TraG-D_C
T4SS-DNA_transf
AAA_16
AAA_19
FtsK_SpoIIIE
AAA_11
AAA_22
GvpD_P-loop
DUF87
Zeta_toxin
SLFN-g3_helicase
AAA_7
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QCI92909
UniProt:
A0A4D7DBN3
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Position
complement(916819..918900)
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AA seq
693 aa
AA seq
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MSIFRHDTLGSWTRGGQAIVHNVRMTTQVFYQTFLAGLVIWIGGIIWYALEKSSEYERFV
LVKLGQAAVMGDAVPGNVTPILFRTPAGKQYWTSPKALLDSGVAHKTLAAFETYLLHGAA
ISGLFALAMLGWAWFYFTRTGRGLGSNQFLRGARFGTVRQVRRALWRHAKGSFDIGGVNV
PDAFEPEHILICGAPGTGKTNIIVKMLDGIRKRKRRAIVYDTAGTFVEKFYRPGIDVLLN
PLDARADCWSPWVDVPRDYHYDQIAESTIPDKAGDPFWAKAARGTLVAVLRKLARQERTL
VSILLDTLLRSKLKDLAAFAVGTDAAAFISTEGERTSAGIQAELASVMRSFAYLDDTADG
FSIRDWVANEKDDSWLFITVKADQLPSLRPLITVWLDIAISAIMSMTPDRNRRLYCVIDE
LPTLQRLPSLGDFLARARKYGGCGILGFQSYPQLEATYGIQDAAAITGYCSTWVALRAND
TPTAKHVSENLGQVEQVEANEGMSYGVNDMRDGVNLSRMQVTRPLVMHTEVTNLPNLIGY
LRFGRSLPVVRFEDRYNKVASVAEAFEERGTPPVRLAVAVPPASPPSVTPATPARPKAGA
PKRRRTEPKAQEAELPLPSPSDEMGTSGGVPSAKSTPSTQSNGADERAPTSPPLELFGKP
AGFRLAGAPDLFLRLFKVPGRVAQRLELAAQTL
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgagcatctttcgtcacgacacgctcggctcctggacccgcggcggccaggccatcgtc
cacaacgtccgcatgaccacccaggtcttctaccagacctttcttgcggggctggtgatc
tggatcggcggcatcatctggtacgcgctcgaaaagtcgtccgagtacgagcgcttcgtt
cttgtgaagctcggccaggccgctgtcatgggggatgccgttcccggcaacgtcaccccg
atcctgttcaggacaccggcaggcaagcagtactggaccagcccgaaggcgctcctcgat
tccggtgtcgcccacaagacgctcgctgccttcgagacctatctgctccatggagcggca
atctccggcctgttcgccctcgccatgctggggtgggcctggttctacttcactcgcacc
ggacggggactcggctcgaaccagttcctgcgcggcgcgcggttcggaaccgtgcggcag
gttcgtcgcgccctgtggcgtcatgccaaggggagcttcgacattggcggtgtcaatgtc
cccgatgcgttcgagcccgagcacatcctgatctgcggcgcccccggcaccggcaagacc
aacatcatcgtcaagatgctcgacggaatccggaagcggaaacggcgggccatcgtttac
gatacggctggaaccttcgtcgaaaaattctatcggccggggatcgacgttctgctcaat
ccgctcgatgcgcgggcggattgctggtcgccctgggtcgatgtcccgcgggactatcac
tacgatcagatcgccgagtccacgattcccgacaaggccggcgatcccttctgggcgaag
gctgcgcgcggcacgctggttgccgtcttacggaagctggcccggcaggagcgcaccctg
gtctcgatcctgctcgacacgttattgcgctccaagctgaaggacctcgccgcgttcgct
gtcggtacagacgcggcggcattcatctcgacggagggggaacgcaccagcgccggcatc
caggccgagctcgcctcagtgatgcgcagcttcgcctatctcgatgacaccgcagacggt
ttctcgatccgcgactgggtcgccaatgagaaggacgacagctggctcttcatcactgta
aaggcggaccagcttccttcgctccgtcccctgatcacggtgtggcttgatatcgcgatc
agcgcgatcatgagcatgacgccggatcgcaaccgccgcctctattgcgtgatcgacgag
ttgccgacgctccagcgcctgccgtcgctcggcgacttccttgctcgcgcccggaagtat
ggcggctgcggcatcctggggttccagagctacccgcaattggaagcaacctatggcatc
caggatgccgccgcgatcaccggctactgctcgacctgggtggcgctgcgcgccaacgac
acgccgaccgcaaagcatgtcagcgagaatctggggcaggtcgaacaggtcgaagccaac
gagggcatgtcctacggcgtgaacgatatgcgcgatggtgtgaacctctcgcggatgcag
gtgacgcgacctctggtaatgcacaccgaggtcaccaatctgcccaacctcatcggctat
ctgcgcttcggacgcagcctgcctgtggtccggttcgaggaccgctataacaaggtcgcc
tccgtcgctgaggcgttcgaggagcgtggaacaccgcccgttcggctcgcggtcgcggtc
ccccctgcgtccccaccttcggtaactccggctacgccggccaggccaaaagcgggggca
cccaaacgacgccggacggagccgaaggcgcaagaggccgaactcccgcttccttcgcca
tcagacgagatgggaacatcgggtggcgtcccaagtgcaaaatccacgccatcgacgcaa
tcaaatggggccgatgaacgggcgcccacttcaccgccactcgaactgttcggcaagccc
gccgggttccgtcttgccggcgcgcccgatctgttcctgcgtcttttcaaggttccgggt
cgcgtcgcgcagcgccttgaactcgcggcccaaaccctttga
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