Novosphingobium sp. EMRT-2: FA702_05285
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Entry
FA702_05285 CDS
T06038
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nor
Novosphingobium sp. EMRT-2
Pathway
nor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FA702_05285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nor03019
]
FA702_05285
03009 Ribosome biogenesis [BR:
nor03009
]
FA702_05285
Enzymes [BR:
nor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FA702_05285
Messenger RNA biogenesis [BR:
nor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FA702_05285
Ribosome biogenesis [BR:
nor03009
]
Prokaryotic type
rRNA processing factors
FA702_05285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF7895
Motif
Other DBs
NCBI-ProteinID:
QCI93021
LinkDB
All DBs
Position
1065878..1068631
Genome browser
AA seq
917 aa
AA seq
DB search
MTTRMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKEDREALLAEEAAHAEEEAALRAAEDDADDGFGDEGDA
FGDDEGVTEVDTSEKDDVATIEGGVVEGESEESEQEAEAEDASADNGGRRPRRGRRQGRG
QAKEADELRAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVL
MPNSSHGGGISRKISSASDRKRLKSIIGELELPKSMSCIVRTAGLQRTKTEIKRDFDYLA
RLWDEIRERTLHSSAPALIHSDSDLIKRAIRDIYNRDIEEVIVEGEAGYRAGKDFMKLLM
PSHAKRVKHYADPVPLFQRYGAEDQLTAMYDPVVQLKSGGYLVINPTEALVSIDINSGRS
TKEHGIEATALSTNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEKAMKDALKN
DRARIQVGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGLSALRMIED
EAAKGRGSVITLYASQEATIYVLNTKRADLAEIEARYGVTVEVIPEGENEGAKMRVASRG
PKPEFQPRFEPIVEPEEDDLADETFDDEEEEEEAEARGDDRDNGNGRRKRRKRRRGRGRR
DDETGQTEDTRSADAGDGEAEAADDVDDGEETESAVAAGEDADGERGPRKRRRRSRRRRG
GGREADGAEGGEEVSVADEAAASEEAPEETVAEAPAEAETAEAVAAPVDEAPAKPKRTRR
KKADAAPAVEEAPAAEAAPAEPVATEEAAAEEAPAKPKRTRRKKADAAPAVEEALAAEAA
PAETVVAEPAAAEEAPAKPKRTRRKKAETAAPAEEVTEAVAEAEAEPAVTEQADDDANAE
AAGGASRRGWWQRTFGA
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcatgctgatcgatgcgcgccaccaggaagaaacccgggtggcggtgctc
aagggcaaccgtattgaagaattcgactttgaatcggctgatcacaagcagatcaagggc
aacatctatctcgccaaggtaacccgcgtcgaaccgtcgctgcaggcggcgttcgtcgat
ttcggcggcaaccgccacggcttcctggccttcagcgaaatccatccggattactaccag
atccccaaggaggatcgcgaggcgctgctggccgaagaagccgcgcatgccgaggaagaa
gccgccctgcgcgcggccgaggatgatgcggacgacggtttcggcgatgaaggcgatgcc
ttcggcgacgacgaaggcgtgaccgaggtcgacacctcggaaaaggatgatgtcgccacg
atcgaaggcggcgtggtcgaaggcgaaagcgaagagtccgagcaggaagccgaggcggaa
gatgcctctgccgataacggtggacgccgtccgcggcgcggacgccggcagggccgtggc
caggccaaggaagccgacgaactgcgcgccaagcgcatggcgctgcgccgccgctacaag
atccaggacgtgattcagcgccgccaggtgctgctggtacaggttgtgaaggaagagcgc
ggcaacaagggcgcagcgctgaccacctacctcagcctcgcgggccgctattgcgtgctc
atgcccaattccagccatggcggcggcatcagccgcaagatttccagcgcttcggaccgc
aagcggctgaagtcgatcatcggcgagctggaactgcccaagtcgatgagctgcatcgtt
cgcactgccgggctgcagcgcaccaagaccgaaatcaagcgcgacttcgattaccttgcc
cgcctgtgggacgagatccgcgaacgcacgctgcattccagcgcgccggcgctgatccat
tcggacagcgacctgatcaagcgcgcgatccgcgatatctacaaccgcgatatcgaggaa
gtgatcgtcgagggcgaagccggataccgcgccggcaaggacttcatgaagctgctgatg
cccagccacgccaagcgggtgaagcactatgccgatccggttccgctgttccagcggtat
ggcgcggaagaccagcttaccgcgatgtacgatccggtggtccagctgaagtcgggcggc
tacctcgtcatcaacccaaccgaagcgctcgtgtcgatcgacatcaactcgggccgttcc
accaaggaacacggcatcgaggcgacggcgctttccaccaaccttgaagcggcccgcgaa
atcgcgcgccagcttcgcctgcgcgacatggccgggctcgtcgtcatcgacttcatcgac
atggagtacggatcgaacatccggaaggtcgagaaggcgatgaaggacgcgctgaagaac
gaccgcgcgcgcatccaggttggccgcatctcgggcttcggcctgatggagatgagccgc
cagcgcctgcgcaccggcgtgctggaggcgaccacccgcgcttgtccgcactgcgatggc
tcgggccttgtccgcaccgcctcgtccgccggcctttccgccctgcgcatgatcgaggac
gaagccgccaagggccgcggcagcgtcatcacgctctatgccagccaggaagcgacgatc
tacgtcctcaacaccaagcgtgccgatcttgccgagatcgaggcccgctatggcgtgacc
gtggaagtgatccccgaaggcgagaacgaaggcgccaagatgcgcgttgcctcgcgcgga
ccgaagcccgagttccagccgcgcttcgaaccgatcgtcgaacccgaggaagacgacctc
gctgacgagacgttcgacgacgaggaagaggaagaagaagccgaagcgcgcggcgacgat
cgcgacaacggcaatggccgccgcaagcgccgcaagcgccggcgcggccgtggtcgccgc
gacgacgaaacggggcagaccgaggacacccggtcggccgacgccggtgatggcgaagcc
gaagcggcagacgatgtcgatgatggcgaggaaaccgaaagcgccgttgccgctggcgag
gatgccgacggcgagcgcggtccccgcaagcgtcgtcgccgcagccgtcgccgccgtggc
ggcggacgcgaggcggatggcgccgaaggtggcgaagaggtgagcgtggcggacgaagcg
gctgcttcggaagaagcgccggaagaaacggttgccgaagctccggccgaagcggaaacc
gccgaagccgtggccgcgcccgtggacgaggctcccgccaagcccaagcgcacccgccgc
aagaaggccgatgccgctccggccgttgaggaagcgccggctgcggaagcggccccggct
gagccggttgccaccgaggaagccgccgccgaggaggcccccgccaagcccaagcgcacc
cgccgtaagaaggccgatgccgctccggccgttgaggaagcgctggctgcggaagcggcc
cccgctgaaacggttgttgccgaaccggctgccgctgaagaagctccggccaagcccaag
cgcacccgccgcaagaaggcggagaccgccgctccggcggaagaagtgactgaggctgtc
gcagaagcggaagcggaaccggctgtcaccgagcaggctgacgatgacgccaatgccgaa
gccgcgggcggcgcatcgcgtcgcggctggtggcagcgcacgttcggcgcctga
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