Novosphingobium sp. EMRT-2: FA702_10650
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Entry
FA702_10650 CDS
T06038
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nor
Novosphingobium sp. EMRT-2
Pathway
nor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FA702_10650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nor03019
]
FA702_10650
Enzymes [BR:
nor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FA702_10650
Messenger RNA biogenesis [BR:
nor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FA702_10650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QCI93959
UniProt:
A0A4D7DFS6
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All DBs
Position
2148715..2150280
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AA seq
521 aa
AA seq
DB search
MSYFSDLGLAEPILRALESKGYNDPTPIQRQSIPALLEGRDLLGIAQTGTGKTAAFALPS
LHRLAADPKPRKPASCRMLVLSPTRELAAQIADNMKGYAKNLNLSVDCVFGGVPIGKQAR
RLVPGIDILVATPGRLLDLIDNRALTLGRVEIFVLDEADQMMDLGFIHALRRVANLLPKQ
RQSLFFSATMPKSIEDLGKQFINNPVRVEVAPQSTTAERVDQFITLINQAEKQALLTLRI
RAMLADKSLDRALVFTRTKHGADRVARHLAGAGVEARAIHGNKSQAQRTAALEAFRQGSC
PILVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGVAISFCAPDEKPY
LRDIERLTGVKLMPQALPENFMQEAARLPAPARRPQEDDAPRHQQGNRRDGGQRSGGQRN
GGQRSAGQGVGGQRTGGGRGDQQAHGGRAQGRDGKPRDVSQRQERRDGQNDRGPVRNPLH
TERADRPEGERAGERDGQQRRFRPRGPGNVGQHRNRVRRAG
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtcctattttagcgatctcggccttgccgagcccattcttcgtgcgctcgaaagcaaa
ggctacaacgatcccacgcccatccagcgccagtcgattccggcgctgctcgaaggccgc
gacctgctgggcatcgcccagaccggcaccggcaagaccgccgcgttcgcgctgccctcg
ctgcatcgcctcgccgccgaccccaagccgcgcaagcccgcctcgtgccggatgctggtg
ctttcgcccacccgcgaactcgccgcgcaaattgccgacaacatgaagggctacgccaag
aacctgaacctctcggtcgattgcgtgttcggcggcgtgcccatcggcaagcaggcgcgc
cgtctggtgccgggcatcgacatcctcgtcgccacgccgggccgcctgctcgacctgatc
gacaaccgcgcgctgacgctgggccgggtcgagatcttcgtgctcgacgaagccgaccag
atgatggacctcggcttcatccatgcgctgcgccgcgttgccaacctgctgcccaagcag
cgccagagcctgttcttctcggccacgatgcccaagtcgatcgaggatctgggcaagcag
ttcatcaacaatccggtgcgcgtggaagtggcgccgcaatcgaccaccgccgaacgcgtc
gaccagttcatcacgctcatcaaccaggcggaaaagcaggcgctgctgacgctgcgcatc
cgcgccatgctggcggacaagtcgctcgaccgcgcgctggtcttcacccgcaccaagcac
ggggcggaccgcgtcgcgcggcaccttgccggcgccggcgtggaagcgcgggcgatccac
ggcaacaagtcgcaggcgcagcgcaccgccgcgctcgaagccttccgccagggttcatgc
ccgatcctcgtcgccaccgacatcgcggcgcgcggcatcgacgtttcgggggtgagccat
gtgttcaacttcgagctgcccaacgtgcccgaacagtacgtccaccgcatcggccgcacc
gcgcgcgccggcgccgatggcgtggcgatcagcttctgcgcgcccgatgagaagccctat
ctgcgcgatatcgagcggctgaccggtgttaagctgatgccgcaggcgctgccggagaac
ttcatgcaggaagccgcccgactgcccgcgcccgcgcgcaggccgcaggaagacgacgct
ccacgccaccagcagggcaatcgccgcgatggtggccagcgcagcgggggccagcgcaac
ggggggcagcgcagcgcggggcagggcgtcggaggtcagcgcactggcggtggtcgcggc
gaccagcaggcccatggtggccgcgcgcagggtcgcgacggcaagccgcgggacgtgagc
cagcggcaggaacgccgcgacggccagaacgatcggggtccggtgcgcaatccgctgcat
accgagcgcgcagaccgtcccgaaggcgaacgcgcaggggagcgcgacggccagcagcgc
cggttccgcccgcgcggccccggcaatgtcggccagcaccgcaaccgggtgcgccgcgcc
gggtaa
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