Novosphingobium sp. EMRT-2: FA702_12345
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Entry
FA702_12345 CDS
T06038
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nor
Novosphingobium sp. EMRT-2
Pathway
nor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FA702_12345 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nor03021
]
FA702_12345 (rpoC)
03400 DNA repair and recombination proteins [BR:
nor03400
]
FA702_12345 (rpoC)
Enzymes [BR:
nor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FA702_12345 (rpoC)
Transcription machinery [BR:
nor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FA702_12345 (rpoC)
DNA repair and recombination proteins [BR:
nor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FA702_12345 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
YqfD
Motif
Other DBs
NCBI-ProteinID:
QCI94254
UniProt:
A0A4D7DEG0
LinkDB
All DBs
Position
2505631..2509911
Genome browser
AA seq
1426 aa
AA seq
DB search
MNDLTKFTNQLAKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVIEPGITPLERYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLIDLDLEQERKDLMEELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDRKGEPGEGMMLADMAEVHQALHA
GAVTMHSKIIARVPQTDESGQQYLKRYETTPGRMLIGECLPKSHTVPFELVNRLLTKKEI
ADVIDQVYRHTGQKETVLFADAIMSLGFRNAFKAGISFGKDDMIIPDSKDALVNETKELV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRATPVDEHGREKPVNSIYMM
SHSGARGSPTQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVIIDDCGTERALEMRAIVQGGTTIASLGERILGRTLA
EDLIEAKTGAVIVEKGTLLDEPAVAKIEAAGVQSARIRSPLICEAQQGVCGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSHLEAICDGTVQYRDIPTI
TDSRGRRLSLARNGEIVVMDTEGRERAMHRVPYGTHLLHENGAIISQGDRLAEWDPFTTP
VITEKPGIVRYQDLIDGRTLTEQVDEATGIAQRVVTENRAGGRAKKDDLRPRLTLLDENS
GEAARYMLAVGTTLSVEDGQEVNAGDILARASREAAKTRDITGGLPRVAELFEARKPKDN
SIIAKIAGRIEFVRDYKAKRKIAIIPEEGEPVEYLVPKSRVIDVQEGDYVKKGDNLISGS
PDPHDILEVLGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTL
LPGEQVDLEEMNEVNGKLEAGLRPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTQA
AVEGKRDSLIGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRASYRKLQESLIAPET
AAEEHAAELAQGPEAAIGNDPLAAVEGETHGTDADAGEYLIEGDEA
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgaccaaattcaccaaccagctcgccaagcccgagaccttcgaccagatc
cagatcggtctcgcttcgcccgagcgcatccgctcctggtccttcggcgagatcaagaag
ccggaaacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgcgcgc
atcttcggtccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcaccgtcaccaaggtgcgccgcgag
cgcatgggccacatcgagctggccgccccggtcgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgctgctggacatgcagctcaagcagcttgagcgcatcctctac
ttcgaaagctacgtcgtgatcgagccgggcatcaccccgcttgaacgctaccagctgctg
accgaggacgaactgctcgacgcgcaggacgaatacggcgaagacgcgttcagcgccggc
atcggcgccgaagcggtcaagcagatgctgatcgacctcgacctcgaacaggaacgcaag
gacctgatggaggagctcgccaccaccaagagcgagctgaagcccaagaagatcatcaag
cgcctcaaggtcgtggaatcgttcatcgattcgggcaaccgcccggaatggatgatcctc
gacgtggtgccggtcattccgccggaactgcgcccgctggtgccgctggacggcggccgc
ttcgcgacctcggacctcaacgatctctaccgtcgcgtcatcaaccgtaacaaccgcctc
aagcgcctgatcgagctgcgcgcgcccgacatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggtggacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccc
gaactcaagctgcaccagtgcgggctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccggctcgacgccaagggtctctcgatgaccctgaagcaggcgaagaag
tgggtcgagaaggaacgcaaggaagtctgggacatcctggacgaggtgatccgcgaacac
ccggtgatgctgaaccgcgcgccgacgctgcaccgccttggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagctgcacccgctggtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggcctctactacctgtcgatggaccgcaagggc
gaacccggcgaaggcatgatgctggccgacatggccgaagtgcaccaggcgctgcacgcc
ggtgccgtgaccatgcactccaagatcatcgcgcgcgtgccgcagacggacgagagcggt
cagcagtacctcaagcggtacgagaccacgccgggccgcatgctgatcggcgaatgcctg
cccaagagccacacggttcccttcgagctggtcaaccgcctgctcaccaagaaggaaatc
gcggacgtcatcgaccaggtctatcgccacaccggccagaaggagaccgtgctgttcgcc
gacgcgatcatgagcctcggcttccgcaacgcgttcaaggcgggcatctcgttcggcaag
gacgacatgatcatccccgacagcaaggatgcgctggtcaacgaaaccaaggaactggtg
gccgattacgagcagcagtaccaggacggcctgatcacgcagcaggaaaagtacaacaag
gtcatcgacgcctggagccgttgcggcgaccaggtggcgaacgccatgatggacgaaatc
cgcgcgaccccggtggacgagcacggccgcgaaaagccggtcaactcgatctacatgatg
tcgcactccggcgcgcgtggttcgccgacgcagatgaagcagcttgcgggcatgcgcggc
ctgatggccaagccttcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgaatacttcaactcgacgcacggcgcccgcaagggtctggccgac
accgcgctcaagacggcgaactcgggctacctgacccgccgtctggtcgacgtgtcgcag
gactgcgtggtgatcatcgacgattgcggcaccgaacgggcgctggaaatgcgcgcgatc
gtgcagggcggtacgacgatcgcctcgctgggcgaacgcatcctcggccgcacgctggcc
gaagacctgatcgaggcgaagacgggtgctgtcatcgtcgagaagggcacgctgctggac
gagccggcggtggcgaagatcgaggcggcgggcgtccagtccgcgcgcatccgttcgccg
ctgatctgcgaagcgcagcagggcgtgtgcggcaagtgctatggccgtgacctcgcacgc
ggtacgccggtcaacatcggcgaggcggtgggcgtcatcgccgcgcagtcgatcggcgag
ccgggcacgcagctgaccatgcgtaccttccacatcggtggcgcggcgcagctcaacgaa
cagtcgcacctcgaggcgatctgcgacggcaccgtgcagtaccgcgacatcccgacgatc
acggacagccgtggccgccgcctgtcgctggcccgcaacggcgaaatcgtggtgatggac
accgaaggccgcgagcgcgccatgcaccgcgtgccctatggtacgcacctgctgcacgag
aacggcgcgatcatcagccagggcgatcgcctggccgaatgggatccgttcaccacgccg
gtcatcaccgaaaagccgggtatcgtgcgctaccaggacctgatcgacggccgcacgctg
accgagcaggtcgacgaggcgaccggcatcgcgcagcgcgtggtgaccgaaaaccgcgcc
ggcgggcgggccaagaaggacgatctccgtccgcgcctgaccctgctggacgagaactcg
ggcgaagccgcgcgctacatgctcgcggtgggcacgacgctctcggtggaggacggccag
gaggtcaacgccggcgacattctcgcccgcgccagccgcgaagccgccaagacccgcgac
atcacgggcggtctgccgcgcgtggccgagctgttcgaggcgcgcaagcccaaggacaac
tcgatcatcgccaagatcgcgggccggatcgaattcgtccgcgactacaaggccaagcgc
aagatcgcgatcatcccggaagagggtgaaccggtcgagtacctggtgcccaagagccgc
gtgatcgacgttcaggaaggcgactacgtcaagaagggcgacaacctgatctccggttcg
ccggacccgcacgacattctcgaagtcctcggtgtcgaggcgctggcggaatacctcgtc
gcggaaatccaggaagtctaccgcttgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcagaaggtggaaatcaccgatggcggcgataccaccctg
ctgccgggcgagcaggtcgatctcgaagagatgaacgaagtcaacggcaagctggaagcg
ggcctgcgcccggcggaaggcaagccggtgctgctgggcatcaccaaggccagcctgcag
acgcgttcgttcatctccgccgcgtcgttccaggaaaccacccgcgtgctgacgcaggcg
gcggtcgaaggaaagcgcgacagcctgatcggcctaaaggaaaacgtcatcgtcggccgt
ctcatccccgccggtaccggcgcgggcatgaaccgcctgcgcgtggccgcttccagccgc
gatgccgcgctccgcgcgtcctatcgcaagctgcaggaatcgctgatcgcgccggaaacg
gcggccgaggaacatgccgccgaactggcgcagggtcccgaagcggcgatcggcaacgat
ccgctggcggcggtcgagggtgaaacccacggcaccgacgcggacgccggcgaatacctg
atcgaaggcgacgaggcgtaa
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integrated database retrieval system
