Nostoc sp. UHCC 0870: L6494_01040
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Entry
L6494_01040 CDS
T11470
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nosc Nostoc sp. UHCC 0870
Brite
KEGG Orthology (KO) [BR:
nosc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nosc03016
]
L6494_01040
Enzymes [BR:
nosc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L6494_01040
Transfer RNA biogenesis [BR:
nosc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L6494_01040
Prokaryotic type
tRNA splicing ligases
L6494_01040
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UKO98363
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All DBs
Position
242881..244062
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AA seq
393 aa
AA seq
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MPYEKLEIKTKSPVLSWANHPLGSEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIMPAAVGVDIGCGMSAIKTPFTGEQLEGKLKKIRLDIEAAIPTGFNENKDVEKS
VTNWQRWRDFQDLHRGVQDLQSKAMKQMGSLGGGNHFIEVCLDTENQVWLMLHSGSRNIG
NKLAQCHISTAKELAKMAGNHLPDPDLAYFIAGTPEFRAYWNDLQWAQNYARVNRDVMMT
RFQRIMEKHLTGGKAIKPLLQVNCHHNYAEKEIHFGEDVYVTRKGAVRADKEDYGIIPGS
MGAKSFIVKGKGNAHSFCSCSHGAGRLMSRSKAKNVYTLDDLIEQTKGVECRQDSGVLDE
IPSAYKPIEQVMENQSDLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccctacgaaaagttagaaattaagacaaaatcacccgttttatcttgggcaaatcac
cccttggggtctgaagaaaccaagatggctaaaaatgtggcatccctaccttttgtattt
aaacacgtagcattaatgcccgatgttcatttaggaaaaggtgctttagttggttctgta
attgctacaaaagaagccattatgcctgctgctgtcggcgtggatattggttgcggtatg
agtgctattaaaacaccatttactggtgaacaattagaaggcaaactcaagaaaattcgt
ctcgatattgaagcagcaattcccacaggttttaacgaaaataaagatgtcgaaaaatct
gttactaattggcaacgttggcgagattttcaagacttgcatcgtggtgtgcaagactta
caaagtaaagcgatgaaacaaatgggttctctcggtggaggtaatcacttcattgaagtt
tgcctagatacagagaaccaagtttggctgatgttacattccggttcacgcaacattggg
aataaacttgcccagtgtcatattagtacagctaaggaattagcgaaaatggcgggtaat
catttacctgatccagatttagcctattttatagctggtacaccagaatttcgagcttac
tggaacgatttacaatgggcgcaaaattatgcgcgagtaaatcgtgatgtgatgatgaca
cgtttccagcgcattatggaaaagcatctaacaggaggaaaggcaattaagcctttattg
caggtaaattgtcatcataactacgctgaaaaagaaatacattttggcgaagatgtctat
gtaactcgcaaaggtgcagtccgcgcagataaagaagattatggcattattcctggttca
atgggagcaaaatctttcattgtcaaaggtaaaggtaatgcacatagtttttgttcttgc
tctcatggtgctggtcgtttaatgtcgagaagtaaagctaaaaatgtctacactctcgat
gatttaattgagcaaaccaagggtgtggaatgccgacaagatagtggtgttttagatgag
attcctagtgcttataaacctattgagcaagtcatggaaaatcaatcagatttagtggaa
gttgtcgccacactcaagcaagttgtttgtgtgaaaggttaa
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