Nostoc sp. UHCC 0870: L6494_05815
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Entry
L6494_05815 CDS
T11470
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nosc Nostoc sp. UHCC 0870
Pathway
nosc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nosc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L6494_05815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nosc03019
]
L6494_05815
03016 Transfer RNA biogenesis [BR:
nosc03016
]
L6494_05815
Enzymes [BR:
nosc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L6494_05815
Messenger RNA biogenesis [BR:
nosc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L6494_05815
Transfer RNA biogenesis [BR:
nosc03016
]
Prokaryotic type
tRNA degradation factors
L6494_05815
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NCBI-ProteinID:
UKO99231
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Position
1303666..1306020
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AA seq
784 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKVLEKKLGCEDEDSLEKLQIALEVLEKIGLLAKERGKYRR
ITEEGLIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLILERSNNTLLARIKQVEGGFRAVPLDDRLLFELKILTNGMKLEEALDHLAHVE
VLRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFSESILDAAAKLSKRLLKA
DLKNKLDLRNLFTIAITEVNSDTKVIENALSLEKTIAGNWQLGFHIADVSHYVQPDEPLD
REALKRGRSVYLGDLVLPMLPEAVADRCSLVPKSDRLAISFLMTISPQSGAVLEWEIQPS
VIHVDTAITKQQAENILQGKAKKESPQAIELIQNLISIGTGIKQVRLARGSLQLNLPANQ
NPYCDEGSLGAVIVNDSPVRSLLTELVLLVNELMATHLNALGVPAIWRLQGTPDPEDVQE
MLKLAINLGVELSLEPEVDIEPLDYQHLTRAFADSPSEQVLTYLLQDTLKPAVYSTTKGN
HFGLALAQYTHCTSPLRRYPDLLMQRVYYQLLEHGRDRRNTRVKERINLRHSYSHGEINW
NVLPPELQQELQSDLTRVIIQINDREKEVQEAEADLAGLQKAQLMKQRIGQVFQGVITGV
QSYGFFVEIEVPAVDFEVKGNPGVPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASY
RLGDRVSVQVKSVDYYRQQIDLVTVGSDGLVKGLGVGNVNGDMPDIYLRNDLESDDLDPY
AEEE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacactccttgccaatttcaccgatgataaattggtagctcgc
aaagtcttggaaaagaaactaggttgcgaggatgaagacagtttagaaaaactccagata
gccttggaggtgttggaaaaaatcggacttttggcaaaggaacggggtaagtatcgccgc
atcacagaagaaggtctaattgaagctaaattgcgttgttctagcaaaggcttttgcttc
gccattcaagatgtcgaaggggcggaggatatttatatccgcgaaagccatttgagtaat
gcttggaatggcgatcgcgttttagtcagagttctcaaggaaggtagtcgtcgccgttct
cctgaaggagaagtaaagttaattttagaacgttctaataacactttattggcacggatt
aaacaagtagaaggaggttttcgggctgttcccttagatgaccgactcctctttgaactc
aaaattctcactaacgggatgaaattggaggaagccctcgaccacctagcccatgtggaa
gtgctgcgttatcccttagctcagtatcccccccttggtcgagtagttcaaattctcggt
agtgatgctgaagccgcagctgatatagatttagttacctgtaaacacgatttatctcgg
actttctcagagtcaattttagatgcagccgccaagttatccaaaaggctgttaaaagcc
gacctgaaaaacaaactcgatttacgtaatttatttactattgcgattactgaagtcaat
agtgacacgaaggtaatagaaaatgccctgagtttagaaaaaactattgctggtaattgg
caattaggctttcatatcgccgatgtttctcactatgtccaacctgacgaacctttagat
cgggaagccctcaaacgcggtaggtcagtgtatttgggtgatttagtgttgcccatgtta
ccagaggctgtagccgatcgctgttcattagttcccaaaagcgatcgcttggctatctca
tttttaatgaccatttctccccaatcaggtgcagtgttggaatgggaaatccaaccgagt
gtcattcatgtagatacagccattaccaaacaacaagcagaaaacattctccaaggtaaa
gctaaaaaagaatctccacaagccatagaactaatccaaaatctcatcagcatcggcaca
gggatcaaacaagtgcgtctggctcgtggtagcttgcagttaaatctacccgccaaccaa
aacccctattgtgatgaaggaagtctgggggctgtgattgttaatgattccccagtgcga
tcgctactcacggaattagtgctattagttaatgaactaatggctacccacctcaacgct
ctaggtgttccagctatctggcgtttacaaggtacacccgaccctgaagacgtgcaggaa
atgctgaagttagcgattaacttaggtgtggaattatccctagaaccagaagtagatatc
gaacccttagattatcaacacctgactagagcttttgctgattccccctctgagcaagtg
ttgacttatctattacaagataccctcaaaccagcagtttacagcaccaccaaaggtaat
cactttggtttagctctagcccaatacactcactgcacctcccctttacggcgttatcct
gacttactgatgcagagagtgtactatcagctactagaacatggacgcgatcgccgcaat
acccgtgtgaaagaacggataaacctgcgccactcctacagccacggggaaattaactgg
aatgtcctccccccagaattgcagcaagaactgcaaagcgacttgacacgggtgattatc
caaatcaacgacagggaaaaggaagtccaagaagccgaagccgatttagctggactgcaa
aaagcccaactcatgaaacagcgcattggacaagtatttcaaggcgtaattaccggcgtg
cagtcctatggtttctttgtggaaattgaagttccagccgtggattttgaagtcaagggt
aatcctggtgtacctttacgggtagaaggactagtacacgttagttccctcaaagatgac
tggtacgaataccgcgctagacaacaggcactatttggcaggaaaaatcgcgcttcttat
agattaggcgatcgcgtctccgtccaagtgaaaagcgtcgattactatcgccagcaaata
gatttagtcaccgttggtagcgatggcttagtcaaaggcttaggtgttggtaatgtaaat
ggtgatatgccggatatctacctacgtaacgatcttgagtcagatgatttagacccttat
gctgaggaagagtaa
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