Nostoc sp. UHCC 0870: L6494_19475
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Entry
L6494_19475 CDS
T11470
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nosc Nostoc sp. UHCC 0870
Pathway
nosc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nosc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L6494_19475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nosc03019
]
L6494_19475
Enzymes [BR:
nosc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L6494_19475
Messenger RNA biogenesis [BR:
nosc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L6494_19475
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
SidE_PDE
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UKO96772
LinkDB
All DBs
Position
4618989..4620293
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AA seq
434 aa
AA seq
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MSFSTLGLSKEIIRAVTERGYTKPTPIQMQAIPAVLSGRDLLAGAQTGTGKTASFTLPLL
HRLSSDNSVQNTSNEYSPIRALILTPTRELAAQVELSVREYGKYLNLNTMAMFGGVSINP
QKRLLKGRVDILVSTPGRLLDHVQQGTINLSHIEILVLDEADRMLDMGFIRDIRRILSLL
PKQRQNLLFFATFSEKIKALATGLLNQPKMIEVARRNVTADTVAQKVYKVDRDRKRHLLA
HLIRQDNWYQVLVFTRTKYGADRLVKELSQERIQALAIHGNKSQSARTHALAKFKNGSLQ
VLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVCVDEYPLL
ADIEKLIEQRLPVEVVAGLGANSHTKLEAVPDERKHRPQGSQRPVRSTAKKSAQRTITGG
KKSDGRPGRIKPMS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctactctcggcttgtcaaaagaaattatccgtgcagtcaccgaacggggt
tacaccaaacctacaccaatccagatgcaggcgattcctgccgtcttgtcggggcgtgat
ttgctagctggcgcacaaacggggactggaaagactgccagcttcacgctaccgctttta
catcggttgtcttccgacaatagcgttcaaaatacatctaatgaatactcaccaatccgg
gcgttgattctcaccccaactcgtgaactcgccgcacaggtggagttaagcgtgcgtgag
tatggcaagtatctaaatttgaacacgatggcaatgttcggtggggtcagcattaatccc
caaaaacggcttttgaagggtcgtgtggatattctagtttctaccccagggcgactgcta
gaccatgtgcagcagggtacgataaatctgtcacatatcgagattttagtgctagatgaa
gcagatcggatgttagacatgggttttattcgtgatatccggcgcattctctcgctccta
cccaaacagcgacaaaatttgctattcttcgccaccttctcagaaaaaattaaggcactt
gctaccgggctacttaatcaaccgaagatgatcgaggtagcacgccgcaacgttaccgcc
gatacagtagcccaaaaagtctacaaagtagaccgtgaccggaaacgtcacctacttgct
cacctaattcggcaagataactggtatcaagtgttagtattcactagaacaaagtatggt
gctgaccgtctggttaaggagttaagccaggagcgtattcaagcactagccattcacggt
aataagagtcagtcggcgcgtacccacgctttagcaaagttcaagaacggtagtttacag
gtattggtggcaacagacattgcagcgcgaggtcttgacatcagtgaactaccccatgtg
gtcaatttcgatctgcccaatgtaccagaagattatgttcatcgcattggtcgtactggt
cgcgctggtgcgtcaggtgaagcggtatcgctggtatgcgtcgatgaatacccgttgttg
gcagatatcgaaaaactgattgaacagcgattacctgttgaagtggttgctggcttggga
gcgaattcccacaccaagctggaagcagttccagatgaacgcaagcacagacctcaaggt
agccaacgtccggttcgctctacagctaaaaaatcggcacagcgaaccataacaggtggg
aaaaagtctgatggtcgtcccggtcgcatcaagcctatgagctaa
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