Nostoc sp. ATCC 53789: GJB62_04985
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Entry
GJB62_04985 CDS
T10687
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
nost Nostoc sp. ATCC 53789
Brite
KEGG Orthology (KO) [BR:
nost00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nost03400
]
GJB62_04985 (sbcC)
DNA repair and recombination proteins [BR:
nost03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GJB62_04985 (sbcC)
Archaeal homologous recombinant proteins
GJB62_04985 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SMC_N
Rad50_zn_hook
SbcC_Walker_B
AAA_29
AAA_21
DUF5408
Motif
Other DBs
NCBI-ProteinID:
QHG15382
LinkDB
All DBs
Position
1247788..1250814
Genome browser
AA seq
1008 aa
AA seq
DB search
MIPVQLILKNFLSYRDATLDFRGLHTACISGSNGAGKSSLLEAITWAIWGESRATAEDDV
IYSGAKEVRVDFTFQSNQQKYRVIRTRIRGGTSVLEFQIEIPSGFRSLTGKGVRATQDLI
LEHIKLDYDTFINSAYLRQGRADEFMLKRPTERKEILAELLKLNQYDDLEERAKESSRQF
KARAVELERSLESIKIQLQQRETTEAQRVELEAELNQLQQVQAFDNIQLQSLQVVQHQRQ
NWEQQLSFVKQQYQNLTQDCDRLQQEQSAIGSQLSDLEKILHQEAEIKAGYAQYQSLQSQ
EEAFAAKFEEHTRAQQTRQQKQQQLTKQIHEIERQLQQAQAQLEALQQQERDIQQTLTKS
GEVEAALAQLTAARHHVARLDQLQMQVTPLLQQRATLQSQLDRTHAGLVARLEQLQSTEN
QLQRQQHRQPQLQQAVMDVAIQIEELDKKRVYLQRVQEKGHERRHFIERLQAHQRDYEKL
MGELEQKLQMLQNPEALCPLCERPLDEHHWSRVVEKTQAELEDTQGQFWVVREQMAVSDR
EIQVLRQEYREISQQLAGYDGLREQRGQLAAQLEATTDVQQQLQQIAVEKQHLERSLQAG
DYAPDKQAELRQLDQYLQQANYNEQDHALARSEVERWRWAEIKQGQIKDATKRQAQLLAR
KPELQSQIAQLQVRIQQDQTDSECAKQIAALERHIAEIGYSSEQHNNLRIAVRQAQSWHL
RYQQLLSAQQQYPQLQTRLQELEESRSARVTERQKLGGQIESIIQQLQATANPSAQIQAL
EQQLAIRRRQLDEQIAKLGRLEQLALQLETLQIQYEQQQQQLQSCKQEYRVYQELAQAFG
KNGIQALMIENVLPQLEAETNQLLSRLSGNQFHVQFITQKAGRSAKSTKKNAKLIDTLDI
LIADSRGTRSYETYSGGEAFRINFAIRLALAKLLAQRAGAALQLLIVDEGFGTQDAEGCD
RLIAAINAIASDFACILTVTHMPHLKEAFQARIEVNKTQEGSQLSLSI
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgatcccagtacaacttatcctcaaaaactttcttagttaccgtgatgcaactttagat
tttcgtggtttgcatacggcttgtatttcgggttccaatggtgcgggtaaatcttcgctt
ctggaagcaatcacttgggcaatttggggtgaaagccgcgccactgctgaagatgatgtc
atctattctggcgcgaaagaagttcgggttgattttacttttcaaagtaaccagcaaaaa
tatcgggtgattcgtacccgaattcggggaggtactagcgttcttgaatttcaaatagaa
atcccatctgggtttcgctcacttactggcaaaggggtaagagcaacccaagatttgatt
ttagaacatatcaagctcgattacgatacatttattaattctgcctacttacgtcaaggt
cgtgctgatgaattcatgctcaagcgcccaacggaacgcaaagaaattttagcagagtta
ttgaaactcaatcagtatgatgatttggaagaacgggcaaaggaatcttctcgtcagttt
aaagccagggcagtagagttagagcgttctttggagtcgattaaaattcagttgcaacaa
cgcgagacaactgaagcgcaaagagtggagttagaagccgaactcaaccaactgcaacag
gtacaagcctttgataatattcaattacaaagtttgcaagttgtccagcatcagcgccaa
aattgggaacaacaactcagctttgtaaaacagcaataccaaaatcttacccaagattgc
gatcgcctccaacaagaacaatcagctattggctctcagttatcagatttagaaaaaata
ttacatcaagaagctgagattaaagctggatacgcccaatatcaaagtctccaatctcaa
gaagaagcctttgctgccaaatttgaagaacacacccgcgcccaacaaactcgccaacaa
aagcaacaacagcttaccaaacaaattcacgaaatcgaacggcaactgcaacaagcccaa
gcgcagttagaagctttgcagcaacaagagcgagatattcaacaaactctgactaaatcg
ggtgaagtcgaagctgctttggcacaactaaccgcagcccgccaccatgttgcgcgctta
gatcaactgcaaatgcaagttactccgttgttgcaacaacgagcaactttacaaagccaa
ctcgatcgcactcatgctggtttagtagcgcgactcgaacaactccaaagtactgagaac
caattgcaacgccagcagcaccgccaaccgcaactacaacaagcggtaatggatgtggca
atacagattgaggaactggataaaaagcgggtttatctgcaacgagtgcaggaaaaagga
catgaaaggcgacactttatcgaacgtctgcaagctcatcaacgtgactatgaaaaactc
atgggcgaattagagcagaaattgcaaatgctgcaaaatcctgaagctctttgtccatta
tgtgagcgtccactggatgaacatcattggagccgggtggtggaaaaaacccaggctgag
ttagaggatacccaagggcagttttgggtagtgcgggaacaaatggctgtgtctgataga
gaaattcaggtacttaggcaggaatatcgagaaatttcgcaacaattggcgggctacgat
ggtttacgcgaacaacggggacagttggcagcacaattagaagcgacaactgatgtccaa
caacagttacaacaaattgctgttgaaaaacagcatttagagcgatcgctccaagctggt
gattatgctccggataaacaagccgaactccgccagctagaccaatatctgcaacaagct
aattataatgaacaagaccacgccctcgcccggagtgaagttgagcggtggcgatgggca
gaaattaaacaagggcaaattaaagatgcaactaagcgacaagcgcaactattagcccga
aaaccagaattacaatcccaaattgctcaattacaagtcagaatccagcaagatcagact
gattctgaatgtgctaaacaaattgcggctcttgagcgtcatattgccgaaattggctac
agttccgagcagcacaacaatctgcgtatagctgtccgccaagctcaatcttggcatttg
cggtatcaacaactgctatcagcccagcagcagtatccccaactccagacgagattgcaa
gagttagaggaatccagaagcgccagagtaacggaacggcaaaaacttggcggacaaatt
gaaagcattatccagcaactacaagcaacagctaacccatctgcccaaattcaagcttta
gagcagcaattagcaatccgcagacggcaactcgatgagcaaattgccaagttagggcgt
ttggaacagctggcgcttcaactggaaacgctgcaaattcagtatgaacaacagcagcag
caattacaatcttgcaagcaagaatatcgtgtttatcaggaattagcgcaagcttttggt
aaaaatggtatccaagcactgatgattgaaaatgtgttaccgcaactggaagccgagaca
aatcaattactttcgcggttgagtggtaatcaatttcacgtacaatttattactcagaaa
gctgggcgcagtgctaaatcaaccaagaaaaatgccaagctcatagacaccctagatatt
ttaatcgccgattctagaggaacgcgatcttatgaaacttactctggtggagaagccttt
agaattaactttgccatccgtttggcactggcgaaattattagcgcaacgggcaggggcg
gcattgcaattgttgattgtggatgaaggttttggtacacaggatgccgaaggatgcgat
cgcttgattgcagcgattaatgcgatcgcttccgatttcgcctgcatcctcactgtcacc
cacatgccccacctcaaagaagctttccaagccaggattgaggtgaataaaactcaagaa
ggttcgcagttgagtttgtcaatttaa
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