Nostoc sp. ATCC 53789: GJB62_26890
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Entry
GJB62_26890 CDS
T10687
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nost Nostoc sp. ATCC 53789
Pathway
nost03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nost00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJB62_26890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nost03019
]
GJB62_26890
Messenger RNA biogenesis [BR:
nost03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GJB62_26890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QHG19228
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Position
6531128..6532897
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AA seq
589 aa
AA seq
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MAKNEANNSALKIIPLGGLHEIGKNTCLFEYDDEIILLDAGLAFPTEAMHGVNIVLPDTT
YLRENRHKIKGMIVTHGHEDHIGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRT
EIRTVLPRDVVRIGKNFLVEYIRNTHSIADSFTVAIHTPLGVVIHTGDFKIDHTPVDGEK
FDLQRLAEHGEKGVLCLLSDSTNAEIPGFTPSERSVYPNLERVFSQATGRLFVTTFASSV
HRINMILDIAKKQNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHAVRNLPDEKVLV
LTTGSQGETMAAMTRIANKEHPHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMIQGAKV
VYGRDKGIHVSGHGCQEEQKLMIALTRPKFFVPFHGEHRMLVKHAETAQSMGIPAENMII
IQNGDIVELTEDAIRVAGKVPSGIELVDTTSSGMVSAKVLQERQRMASEGIITIAAAIDW
NGKLLAKPETHLRGVVTTVERSLLQTWVKQRIEEILTVRWTEFAPGGEAADIDWGGLQGT
LERELQRSIRRELQCQPSVTLLMQIPDEPPVKVADGRRRRTRTAAQVAS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaacgaagctaataattccgccttgaaaattattcctttgggcggtttgcac
gaaattgggaaaaatacctgtctttttgagtatgacgatgaaattatcttgttagatgca
ggattggcttttcccacagaggcaatgcatggagtaaatattgttttgccagatacgacc
tatctacgggaaaatcgccacaaaattaaggggatgatcgttactcacggtcatgaagac
catatcggtgggattgctttccatctcaagcagtttgatatccccgtgatttatggccct
aggctagcaatggcgatgctagagggtaaattggaagaagcaggagtccgcgatcgcaca
gaaatcagaacagttttaccacgtgatgtagtgcggattggcaaaaactttttagtggaa
tatatccgcaacacccactccatcgctgatagtttcactgttgccattcatactcccctt
ggtgtagtcattcacacaggggatttcaaaattgaccataccccagtagatggtgaaaag
tttgatttgcaacgactagcagaacatggtgaaaaaggcgttctttgcctgctaagtgat
tccactaacgctgagataccaggatttacaccttcagaacgttcggtttatccaaaccta
gagagagtatttagtcaagccactgggcgattattcgtcacgacctttgcttctagcgtg
catcgcatcaatatgattttggatatcgccaagaagcagaaccgtgtagtaacggttgtc
gggcgttctatgctgaacttgattgctcatgcccgcaatttaggttacatcaagtgtgaa
gataatttgctgcaaccattgcacgcagttcgtaatctccctgacgaaaaagttttagtc
ttaactacaggttctcagggtgaaacgatggcagcaatgacccgcattgccaacaaagaa
catcctcacatcaaaatccgccaaggagatacagtagtattctctgctaaccccattccc
ggaaatacgatcgcagtagtcaacaccattgataaattgatgattcagggtgcgaaagta
gtctacggtcgggataaagggattcacgtctccggtcacggctgtcaggaagagcaaaag
ctgatgattgccttaactcgacccaaattctttgtgccatttcacggcgaacatcggatg
ctagtgaagcacgcagaaacggctcagagtatgggtattcccgcagaaaatatgatcatt
attcaaaatggtgatattgtcgaactgactgaagatgctattcgcgttgctggtaaagtg
ccatctggtatcgaattggtggatactaccagttcgggtatggtaagcgccaaagtttta
caagaacggcaacgtatggcttcagaaggcattatcacgatcgcagctgcaattgattgg
aatggtaaactgttggcgaaaccagaaactcacctgcggggtgtagttacaactgtagag
cgatcgctcttacaaacctgggtaaaacaacgcattgaagaaatcctcactgtgcgctgg
acagaatttgctcctggcggtgaagcagcagatatagactggggcggattgcaaggaact
ttagaacgagaattgcaacgttccatccgtcgagaattgcaatgtcagccatctgtgact
ttgttgatgcaaatccctgatgagccacctgtaaaagttgccgatggcagaagacggcgg
actcggactgctgctcaggtagcatcatag
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