Nostoc sp. UHCC 0702: JYQ62_05325
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Entry
JYQ62_05325 CDS
T10690
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nosu Nostoc sp. UHCC 0702
Pathway
nosu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nosu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYQ62_05325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nosu03019
]
JYQ62_05325
03009 Ribosome biogenesis [BR:
nosu03009
]
JYQ62_05325
Enzymes [BR:
nosu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JYQ62_05325
Messenger RNA biogenesis [BR:
nosu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYQ62_05325
Ribosome biogenesis [BR:
nosu03009
]
Prokaryotic type
rRNA helicases
JYQ62_05325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
UvrD-helicase
VpsR
Motif
Other DBs
NCBI-ProteinID:
QSJ18241
LinkDB
All DBs
Position
1156946..1158481
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AA seq
511 aa
AA seq
DB search
MNLSFQELGISQERVELLEKIGFTAPTNIQVQAIPQLLAGRDVVGQSQTGTGKTAAFTLP
ILERLDVHTKAVQALVLTPTRELAIQVHDAVAQFMGNDGLRVLAIYGGQSIDRQILQLKR
GVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVVKILSQAPQDRQTA
LFSATMPPSIRMLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRQWTKAKALQPILEME
DPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLSRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYLHRIGRTGRAGKEGTAISLVQPFERRKQQVFERH
NRQNWQLLSIPTRAQIEARHINKLQEQVGEALTGERLASFLPIVSELIEKYDAQAIAAAA
LQIAYDQTRPAWLQSDVEIPQEESPLPKPKINKRRDSSGERTRSSWVKSDSSIGDDETRG
TPKPKLRTSRRDSVSPVNHKLSSPTAKESAS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttcaagaattaggcatttcacaagaacgtgttgagctattagaaaaa
attggctttaccgcacctacaaatattcaagtccaagccattccccaactgctagcaggt
agggatgtggtgggtcaatcccagacaggaacaggtaaaacagcagcatttacgctgcca
attttagagcggctagatgttcacaccaaagcagtgcaagccctggttttaacaccaacc
cgtgagttagcaattcaagttcacgatgccgtagcccaatttatgggtaatgatggattg
cgcgtgttagcaatctatggtggtcaatcaattgaccgccaaattttacaactcaaacgt
ggcgttcacatggtcgtgggcaccccaggacgagtgatagatttactcgacaggggttgt
ttgaaactcgaccaagtaaagtggtttgtgttggatgaagctgatgaaatgttgagcatg
ggctttatcgacgacgtggtgaaaatcctctcccaagccccccaagaccgccagacagct
ttattttcagccacaatgccgccatcgattcgcatgttggtaaacaaatttttgcgatcg
ccggcgacagtcacagttgaacaaccaaaagctgcacccaataaaatcaatcaggtggct
tatctcatcccccgccagtggacaaaagccaaagctttacagccgattctggaaatggaa
gatccagaaacagctttaatctttgtgcgtaccagacggacagccgcagaactcaccagt
caactgcaagctgccggacacagtgtggatgaataccacggcgacttgtcccaacaagcg
cgggaacggttattaagccgattccgcaatcgtcaagtgcgctgggtagtagccactgat
attgccgcacgcgggttagatgttgaccaactatcccatgtaatcaactacgacttacct
gatagtgtagaaacatacctccatcgtattggtcgtactggtagagccggcaaagaagga
accgcaatttctttagtacagccctttgaacggcgcaaacagcaagtatttgaacggcat
aaccgccaaaattggcaactgctgtcgattcccacaagggcacaaattgaagcgcggcac
atcaataaattgcaagaacaagtgggagaagccttgacaggcgaacgtctagcttcattc
ttgccgatagtcagcgaactcattgaaaaatacgatgctcaagcgatcgcggctgcggca
ttgcaaatcgcttacgatcaaactcgtccggcttggttgcaatcagatgtagagattccc
caagaggaaagtccccttcccaaacccaaaatcaacaagcgccgcgattcttctggcgaa
agaacccgttctagttgggtaaaatcagatagcagcattggggacgatgaaacacgtggt
actcccaagcccaaactgcggacaagccgtcgtgattcagtttcacctgtgaatcataag
ttgagttcacctacagctaaagagtcagcttcgtaa
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