Nostoc sp. UHCC 0302: WKK05_16135
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Entry
WKK05_16135 CDS
T11286
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nosz Nostoc sp. UHCC 0302
Pathway
nosz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nosz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WKK05_16135 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nosz03400
]
WKK05_16135 (mfd)
Enzymes [BR:
nosz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WKK05_16135 (mfd)
DNA repair and recombination proteins [BR:
nosz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WKK05_16135 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mfd_cyano
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
AAA_16
PsbQ
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WZF20708
LinkDB
All DBs
Position
3783207..3786797
Genome browser
AA seq
1196 aa
AA seq
DB search
MAFSSIVRALARSPLTTEFISKLNRQQELRLNGISRLPKGLVASALAQNQDRNLFVVCAT
LEEAGRVYAQLEAMGWNNVHFYPTSEASPYEPFDPETEMSWGQMQVLADLVIRNWGLGAG
DWETGKTLPNTQSPIPNPGAKRPLAIVATQGALQPHLPPPEAFQPFCLTLKRGMEFDLNT
FSEKITILGYERVPLVETEGQWSRRGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPSTQ
RSALDKVDQLILTPSSFAPIVMAALKDSAEFQVLSAELNSDSAIKTQDGLNAPLPLTGLI
EGSRRFLGLAFEQPASLLDYLPENTLIAIDEPEQCHAHSDRWVENAEEQWRIMGHGEEPT
PLTLPKIHRSFDDCLADVAKFKTLYLSELAEENSGINLASRSVPVTPHQFGKLAETLRQE
RDRNFSIWLISAQPSRSVSLLQEHDCPAQFIPNPRDYQAIDKLQINHTPIALKYSGLAEL
EGFILPTFRLVVITDREFYGQHSLATPGYLRKRRKATSKQVDANKLRPGDYVVHRNHGVG
KFVKLESLTINNETRDYLVVQYADGLLRVAADQVGALSRFRSTGDKAPELNKMTGKAWEN
TKNKVRKAIKKLAVDLLKLYAARSQQQGFSYPADMPWQEELEDSFPYQPTTDQLKAVQDV
KRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALLAPTTILTQQHYHTLKER
FAPYPVNVGLLNRFRSAEERRTIQKRLATGELDVVVGTHQLLGKGVEFKDLGLLVVDEEQ
RFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIKTHLAP
LNSESIRTAIRQELDRGGQVFYVVPRVNGIEETTTNLREMIPGGRFAIAHGQMDESELES
TMLTFSNGEADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHA
WLFYPKQRALSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGF
DLYMEMLEEAIREIRGQEIPQVDDTQIDLNLTAFIPADYITDLDQKMSAYRAVATAKSKE
ELTQIAGEWSDRFGTLPVPANQLLRVMELKQLAKKLGFSRIKPENKQHVVLETPMEEPAW
NLLAANLPENLRTRFVYSPGKVTVRGLAVFKADQQLQSLIDALGKMQGAIPEAAVV
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctattgtgcgtgctttagcgcgatcgccactcaccacagaatttatt
tctaagcttaatcgacaacaggaattacggttaaatggtatttcccggttacccaagggc
ttagtagcttcagcattagcacaaaatcaggacagaaatttgttcgttgtctgcgccacg
ttagaagaagcgggacgcgtttacgcacaactagaggcaatgggatggaacaacgttcat
ttttaccccacctcagaggcttccccctacgagccttttgacccggaaaccgaaatgagt
tggggacaaatgcaggtgttggcagatttggtcataaggaactggggactaggggctggg
gactgggaaacaggcaaaactctccctaatacccaatctccaatccccaatcccggagcg
aagcgacccttggcaattgttgccactcaaggagcgttgcaaccccacctaccgccgcca
gaagcttttcaaccattctgcctgaccctgaaacggggcatggaattcgacctgaatacc
tttagtgagaaaataactatccttggatacgaacgagtgcctttggtggaaacagaaggt
caatggagtcggcgcggcgatattgttgatgtgtttccagtttcgtcagaattaccagtc
cggctggaatggtttggtgatgaaatcgagcaaatacgagaatttgacccctcaactcaa
cgttctgcccttgacaaagttgaccagctaattcttacccccagtagctttgctcccatc
gtcatggcagcactcaaagacagtgctgagttccaagtgctgagtgctgagttaaattct
gactcagcaattaaaactcaggacgggctaaacgccccgctaccgctaacaggactaatt
gaaggtagccgtcgcttcttggggttagcttttgagcagccagcttctcttttggactat
ttaccagaaaataccctaattgccattgatgaaccagaacagtgtcatgctcatagcgat
cgctgggtagaaaatgctgaggaacaatggagaataatggggcatggggaagagcctact
cccttaacattgccgaaaatccaccgctcgtttgatgattgtctagcggatgtagcgaaa
tttaaaacattatatttatcggaactagcagaggaaaatagtggtattaatcttgctagc
aggtctgtaccagttacaccacatcagtttggcaaacttgctgaaacattgcgacaagag
cgcgatcgcaatttctctatttggttgatttcggcacagccttcgcgttctgtgtctcta
ttacaagaacacgactgtccggctcaatttatccctaatccccgcgactaccaagcgatt
gacaagctacaaattaaccacactccaatagctctcaaatattctgggcttgcggaacta
gaaggctttatcctgcctacatttcgacttgtagtcattactgaccgcgaattttatggg
cagcattccttagcgactcccggctatctccgcaagcgccgcaaagctacttctaagcaa
gttgacgccaataagttgcgtccaggggattatgtagttcacagaaatcatggcgttggt
aaatttgtcaagctagaaagtctgacgattaacaatgaaacccgtgattatttggtggtg
cagtatgctgatgggttactcagagttgcggctgaccaagtaggtgcgctatctcggttc
cgtagcacaggcgataaagccccggaactcaacaagatgactgggaaagcttgggaaaat
accaagaataaagtccgcaaagcaatcaaaaaattggcggtggacttgctgaaattgtac
gcagcgcgatcgcaacaacaaggttttagctatccagcagatatgccttggcaagaggag
ttagaagattcgttcccctaccaaccgacaacggatcagctaaaagctgtccaagatgta
aaaagagacatggaaagcgatcgcccaatggatcgcttagtttgtggcgatgtcggtttt
ggcaaaacagaagtagctattcgggctatttttaaagcagttacctctggtaaacaagta
gccctgcttgcacctactaccattttgacgcaacagcactaccacaccctcaaagaacgt
tttgccccctatcctgtaaatgtcggtctactcaaccgtttccgtagtgctgaagaaagg
cgtactatccaaaagcgactagcaactggagaattagatgtagttgttggtacacaccaa
cttttaggtaaaggtgtggaattcaaagatttaggattattggtggtagatgaagaacag
cggtttggggtgaaccagaaagaaaaaataaaaagcttgaaaactcaggttgatgtgctt
accctctctgcaactccgattcctcgcaccctgtatatgtcattgtcgggtatccgggaa
atgagtttgattaccacaccacccccaaccagacgcccaattaaaactcatcttgcacca
ctaaattccgaaagcatccgcactgcgattcgtcaagaattagatagaggtggacaagta
ttttatgtagtaccgcgagttaatggaattgaagagacaacgacaaatttgcgagagatg
ataccggggggaaggtttgcgatcgctcacggtcaaatggatgaaagcgagttagaatca
accatgctcactttcagtaatggtgaagcagatatcctcgtttgtacaacaattattgaa
tctggtttagatattccacgagtcaacaccattttgattgaagatgctcaccgcttcggc
ttatcacagctgtatcagttacgcggtcgtgtgggacgtgcaggtatacaagctcacgcg
tggttattttatccgaaacaaagggcgttatctgatgcggcaagacaaaggttacgcgcg
attcaggaattcacgcaactaggttctggatatcagttggcgatgcgcgacatggaaatt
agaggtgtgggtaacttgctaggtgcagaacaatccggtcaaatggatgcgatcggtttt
gatttgtatatggaaatgctagaagaagcaattcgagaaatccgcggacaagaaattccg
caagttgatgatacgcagattgacctcaacctgacggcgtttatcccagcagattatatt
accgatttggatcaaaagatgagtgcttaccgagcagtagccacagctaaatctaaagaa
gaattaacgcaaattgctggcgagtggagcgatcgctttggtactttacctgtacctgca
aatcaacttttgcgagtcatggaacttaaacaacttgcgaaaaagctcggatttagtcgc
attaaaccagagaataaacagcacgtcgttttagaaacaccaatggaagaaccagcttgg
aatttgttagcggcgaatctacccgaaaatctgaggacgcgctttgtatattctccaggt
aaagttacagtgagaggtttagccgttttcaaagcagatcaacaattgcaaagtctaatt
gatgctttaggcaaaatgcagggtgcgattccagaggcggctgttgtttga
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