Nostoc sp. UHCC 0302: WKK05_28320
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Entry
WKK05_28320 CDS
T11286
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nosz Nostoc sp. UHCC 0302
Brite
KEGG Orthology (KO) [BR:
nosz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nosz03016
]
WKK05_28320
Enzymes [BR:
nosz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
WKK05_28320
Transfer RNA biogenesis [BR:
nosz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
WKK05_28320
Prokaryotic type
tRNA splicing ligases
WKK05_28320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WZF16414
LinkDB
All DBs
Position
6655214..6656395
Genome browser
AA seq
393 aa
AA seq
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MPYEKLEITTPAPVLSWANHALGSAETQMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMSAIKTQFTAAQLEGKLKKIRLDLEAAIPTGFNENKDVEKS
VTNWQRWSNFKDLHRGVQDLQGKAMKQMGSLGGGNHFIEVCLDADNQVWLMLHSGSRNIG
NKLAECHIHTAKELTRMAGNNLPDPDLSYFVAGTPEFKAYWNDLQWAQDYARVNRDVMMA
RFKHIVEKHLGGGKATKPLLQVNCHHNYAEKEVHFGEDVYVTRKGAVRAQTEDYGIIPGS
MGAKSFIVKGKGNAHSFCSCSHGAGRLMSRNKAKNVYTLDDLIQQTQGVECRKDTSVLDE
IPGAYKPIEQVMENQADLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccatacgaaaagttagaaattactacaccagcccctgttttatcttgggcaaatcat
gcgttaggctccgcagaaacccagatggcaaagaatgtggcttcgctaccatttgtgttt
aaacacgtagctttaatgccagatgtgcatctaggaaaaggtgctttagttggttctgta
attgcaacaaaagaagcgattataccagctgctgtgggtgtggatattggttgcgggatg
agcgctatcaaaacacaatttactgctgcacagctagaaggcaaactaaaaaaaattcgt
ttggatcttgaagcggcaattcctacaggtttcaacgaaaacaaagacgttgaaaaatct
gtcaccaactggcaacgttggagtaattttaaagatttacatcgcggcgtgcaagacttg
caaggtaaagcgatgaaacaaatgggttctcttggtgggggtaaccactttattgaagtc
tgccttgatgcagacaatcaagtttggttaatgctacattctggttcgcgcaacatcggc
aataaattagctgagtgccacattcatacagccaaagaattaaccagaatggcaggcaat
aacttacctgatccagatttatcttactttgtagctggtacaccagaatttaaagcatac
tggaacgatttgcaatgggcgcaagattatgcgcgtgtcaaccgcgatgtgatgatggca
cgtttcaaacatattgttgagaaacatctggggggagggaaggcaacaaaacccttatta
caagtaaattgtcatcacaactacgccgaaaaagaagtacattttggcgaggatgtctac
gttactcgtaagggtgcagtccgcgcacaaaccgaagactatggcattattcctggttcg
atgggagcaaaatctttcattgttaaaggtaaaggtaatgctcacagcttctgttcttgc
tctcacggtgcagggcgtttaatgtctagaaataaggcgaaaaacgtctacacacttgat
gatttaattcagcaaactcaaggcgtagaatgccgtaaagatactagtgttttagatgaa
attcctggggcttataagccgatagagcaagtaatggagaatcaagcagatttggttgaa
gttgtagcaacgctcaagcaagttgtttgcgtgaaaggataa
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