Novosphingobium sp. THN1: C7W88_00230
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Entry
C7W88_00230 CDS
T05635
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
not
Novosphingobium sp. THN1
Pathway
not03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
not00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7W88_00230 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
not03019
]
C7W88_00230 (pnp)
03016 Transfer RNA biogenesis [BR:
not03016
]
C7W88_00230 (pnp)
Enzymes [BR:
not01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C7W88_00230 (pnp)
Messenger RNA biogenesis [BR:
not03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C7W88_00230 (pnp)
Transfer RNA biogenesis [BR:
not03016
]
Prokaryotic type
tRNA degradation factors
C7W88_00230 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
BioW
Motif
Other DBs
NCBI-ProteinID:
AXU17844
LinkDB
All DBs
Position
complement(39770..42088)
Genome browser
AA seq
772 aa
AA seq
DB search
MFDVKTVSLEWGGKTLTLETGRIARQADGAVIATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSY
DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFVDGEYVLNPKQDVALADGRLDLVV
AATDTAVMMVESEAKELSEDEMLGAVLFAHDEIKKVVGAIIQLAEKAAKDPWDIDLSDNT
ADIKKKLKDLVGKDVAAAYKLTDKSARSNALNEARAKAKAAFAEEGAQTQMVAMKTMKKV
EADIVRGAILKDGQRIDGRTTTQVRPIEAIVGFLPRTHGSALFTRGETQAICTTTLGTKD
AEQMIDGLEGLRYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKEE
FPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAVLSD
ILGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITREIFEVALRQASEGRAHILGEMTKA
LGEARTELSAHAPRIETLQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISSS
DLTQIEAAKNWILGIVEEAEVGKIYKGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVE
KPTDVVKEGQDVYVKVLEIDQRGKVRLSMRVVDQETGGELEDTRPPREPREPRGDRGDRG
DRRGPRGNDRGGRGDRGPRREGGEGRGDRGPRRDREDSPAPDHMPAFLKSDD
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtcaagacagtatcgctggagtggggcggaaagaccctcaccctcgaaacc
ggccgcattgcccgtcaggctgacggcgcggtcatcgccacctatggcgaaaccgtggtg
ctttgcgcggtcaccgcggcaaagtcggtcaaggaaggccaggacttcttcccgctgacc
gtccactaccaggaaaagtattcggctgcggggcgcattcccggcggcttcttcaagcgc
gaacgcggcgcgacggaaaaggaaacgctggtttcccgcctgatcgaccgtccggtccgc
ccgctgttccccgaaggtttctacaacgaaatcaacgtcatcgcccaggtcctgagctat
gacggcgagaccgagcccgatatcgttgcgatgatcgctgcttcggctgctctgaccatc
tcgggcgtgccgttcatgggcccgatcggcgctgcccgcgtcggcttcgtcgatggcgaa
tacgtgctgaacccgaagcaggacgtggcccttgccgacggccgcctcgacctcgtggtt
gctgcaaccgacactgccgtgatgatggtggaatcggaagccaaggaactgagcgaagac
gaaatgctcggcgccgtgctgttcgcgcatgacgagatcaagaaggtcgtcggtgcgatc
atccagctggccgagaaggctgccaaggacccctgggacatcgacctgtcggacaacact
gccgacatcaagaagaagctcaaggacctggtcggcaaggacgttgccgctgcctacaag
ctgaccgacaagtcggcccgctcgaacgccctgaacgaagcccgcgccaaggcgaaggct
gcgttcgcggaagaaggcgcgcagacccagatggtcgcgatgaagacgatgaagaaggtg
gaagccgacatcgtccgtggcgcgatcctcaaggatggccagcgcatcgacggtcgcacc
accacgcaggtccgcccgatcgaggcgatcgtcggcttcctgccgcgtacgcatggttcg
gcgctgttcacccgcggtgaaacgcaggcgatctgcacgaccacgctgggcaccaaggac
gccgagcagatgatcgacggcctcgaaggcctgcgctatgaaaacttcatgctccactac
aacttcccgccgtactcggttggcgaagttggccgtttcggcgctccgggccgtcgtgaa
gtgggccatggcaagctggcatggcgcgcgctgcacccggtgctgccgaccaaggaagag
ttcccctacacgatccgcatcctctcggacatcaccgagtcgaacggttcgtcctcgatg
gcaactgtctgcggcggctgcctttcgatgatggacgcgggcgttccggtgaagcgtccg
gtttcgggcatcgccatgggcctcatccttgaaggcgacaagttcgccgttttgtccgac
atccttggcgacgaggaccacctcggcgacatggacttcaaggtggccggcacgtctgaa
ggcatcaccacgatgcagatggacatcaaggtcgcgggcatcacgcgcgagatcttcgaa
gtcgcgctgcgtcaggcttcggaaggccgcgcgcacatcctcggcgaaatgaccaaggcc
ctgggcgaggcacgtaccgagctttcggcccacgctccgcgcatcgagacgctgcagatc
gacaagtcgaagatccgtgatgtcatcggcaccggcggcaaggtgatccgcgaaatcgtc
gccaccaccggcgcgaaggtcgacatcgacgacgaaggcctgatcaagatctcgtcctcg
gacctgacccagatcgaagctgcgaagaactggatcctcggcatcgtcgaggaagcggaa
gtcggcaagatctacaagggcaaggtcgtcaacatcgtcgacttcggcgctttcgtgaac
ttcatgggtggcaaggacggcctcgtccacgtctcggaaatgaagaacgagcgcgtggaa
aagccgaccgacgtggtgaaggaaggccaggacgtctacgtcaaggtcctcgagatcgac
cagcgcggcaaggttcgcctgtcgatgcgcgtcgtcgatcaggagaccggtggcgagctg
gaagacacccgtccgccccgcgaaccgcgtgaaccgcgcggtgatcgcggcgatcgcggc
gaccgtcgtggcccgcgtggcaacgaccgtggtggccgtggcgaccgtggcccccgtcgc
gagggcggtgaaggtcgcggtgatcgtggcccgcgtcgtgaccgtgaagacagtccggct
ccggaccacatgccggcgttcctcaagtctgacgactga
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