Novosphingobium sp. THN1: C7W88_07280
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Entry
C7W88_07280 CDS
T05635
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
not
Novosphingobium sp. THN1
Pathway
not03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
not00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C7W88_07280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
not03400
]
C7W88_07280
Enzymes [BR:
not01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C7W88_07280
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C7W88_07280
DNA repair and recombination proteins [BR:
not03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C7W88_07280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AXU18870
LinkDB
All DBs
Position
1476613..1477425
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTVRGLATVLEGQVITSVRVNRADLRRPFPVDLAQALTGARVTGLARRAKYG
LIHTDRERTMVFHLGMSGRWRIDPEDIGKHDHLVLETGEGRVLSLNDARRFGSVDLVDSD
KLASWPQFAALGPEPLGPDLTPKVLAKAFKDRIAAVKLLLLDQRIVAGLGNIYVCEALYR
ARVHPAREGGKVKPGELKLLVPAIKAVLEESIVAGGSTLRDYARPDGELGYFAKDFAVYG
REGEPCTCGGTVERIVQGGRSSFFCAKCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccagaagtagagacgaccgttcgcggccttgcaaccgtgctggagggg
caggtgatcacgagcgttcgggtgaaccgtgccgatctgcggcggccgtttccggtcgat
ctggcgcaggcgctgaccggtgcgcgggtgacggggctggcgcggcgggccaagtatggc
ctgatccataccgaccgcgagcggacgatggtgttccacctcggcatgtcgggacgctgg
cgaatcgatccggaagacatcggcaagcacgaccacctcgtgctggagaccggggaaggc
agggtcctgtcgctgaacgatgcgcggcggttcggttccgtggaccttgtcgacagcgac
aagctggcgagctggccgcaattcgcggcactggggccggagccattgggacctgatctg
acgccgaaggtgctggcaaaggcgttcaaggaccgcattgcggcggtgaaattgttgctg
ctcgaccagcgcatcgtggcggggctgggcaatatctatgtgtgcgaagcgctctatcgc
gcgcgagtgcatccggcgcgcgagggcgggaaggtcaagccgggcgaactgaagctgctc
gtcccggcgatcaaggcggtgctggaggaatccatcgtggccggcggatcgaccttgcgc
gactatgcccggcccgacggcgagctgggctatttcgccaaggactttgccgtctatggc
cgcgagggcgagccgtgcacctgcggcggcaccgtggagcgcatcgtccaaggcgggcga
tcgtcgttcttctgtgcgaagtgccagaagtag
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