Novosphingobium sp. THN1: C7W88_11815
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Entry
C7W88_11815 CDS
T05635
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
not
Novosphingobium sp. THN1
Brite
KEGG Orthology (KO) [BR:
not00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
not03032
]
C7W88_11815 (topA)
03400 DNA repair and recombination proteins [BR:
not03400
]
C7W88_11815 (topA)
Enzymes [BR:
not01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C7W88_11815 (topA)
DNA replication proteins [BR:
not03032
]
Prokaryotic type
DNA Topoisomerases
C7W88_11815 (topA)
DNA repair and recombination proteins [BR:
not03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C7W88_11815 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AXU19559
LinkDB
All DBs
Position
2395750..2398365
Genome browser
AA seq
871 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGPGFKVLASYGHIRDLPVKDGSVRPEEDFAMDWELYGDKQS
RVKAITDAAKDADRLILATDPDREGEAISWHVRELLKKRKSLPKEVERVTFNAITKQTVT
DAMKRPRELDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVERE
REIEVFKAQEYWSVIARLEQGGTEFAARLVKFDGQKLDKLTLGDEGAAMKAKAVVDAGTF
RVEEVETKPTRRNPYPPFTTSTLQQEAARKLGFSASHTMRVAQTLYEAGAITYMRTDGVQ
MDPSAISAARKAISDRYDGHYLPEKPRHYETKAKNAQEAHEAIRPTDFSKDRYGSGDEAR
LYDLIYKRAMASQMASANIERTSVTLRDGTGKHELRATGQVVKFPGFLAVYEEGRDQKAD
GDDEDGSLLPALSKGDTPAKRGVDATQHFTQPPPRYSEASLVKRLEELGIGRPSTYAATL
QVLKDRNYVRTEKNRFFAEESGRLLTSFLERFFTRYVAYEFTAGMEEELDDVSGGRAEWK
KVLAEFWRDFKPKSDEVMEKKPSEVTAELDEFLSDYLFPPREDGSDPRLCPKCEAGRLSL
RGGRYGAFVACSNYPECKYTRKFAQPGGADGDGGGDGVLGKDPESGLEVVRKAGRFGPYI
QLGEGKEAKRASIPKDIGELDLEWALKLLSLPREVGMHPETGKPITASIGRYGPYLAHEG
KYARLKSTSEVFETGMNAAVMHLAAAAAGAGARGGRTAAEPLKVFGPHPTSGGEIKLMAG
RYGPYVTDGTTNATLPKDKQPEALTLEEAITLIDERAAKGPAKGKKGAKKAPAKKAPAKK
AAPKKEAAEKPAAKKPAAKKAPAKKAAKSAE
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtcattgttgaatccccggccaaggccaagaccatcgagaagtacctcggc
cccggcttcaaggttctcgcctcctacggtcatatccgcgatctcccggtaaaggacggc
tcggtccgcccggaagaggacttcgcgatggattgggaactttacggggacaagcagtcc
cgcgtgaaggccatcaccgatgcggccaaggatgccgatcgtctcattctggcgaccgac
cctgatcgtgaaggtgaagcaatttcttggcatgtcagggagttgctgaagaaacgtaag
tcgcttcctaaggaagtcgagcgcgtcaccttcaacgcgatcaccaagcagacggtgacc
gatgcgatgaagcgcccgcgcgaactcgaccaggacctgatcgacgcctatctcgcccgc
cgcgcgctcgattacctgttcggcttcacgctttcgccggtgttgtggcgcaagctgccc
ggcgcgaagtctgccgggcgcgtgcagtccgtggccctgcgcctcatcgtcgagcgggag
cgcgagatcgaggtcttcaaggcgcaggaatactggtcggtcattgcccggcttgagcag
ggcggaaccgaatttgccgcacggctcgtcaagttcgatggtcagaagctcgacaagctg
acactgggtgacgaaggcgccgcgatgaaggccaaggccgtggtcgatgccgggaccttc
cgcgtcgaagaagtcgagacaaagcccacgcggcgcaacccctatccgccgttcaccact
tcgacgttgcagcaggaagccgcgcgcaagctcggcttctctgccagccataccatgcgc
gtggcgcagacgctctatgaagcgggcgcgatcacctacatgcgtaccgatggcgtgcag
atggacccgagcgcgatttcggcggcgcgcaaggcgatctccgaccgctacgatgggcat
taccttcccgaaaaaccgcgtcattacgagacgaaggcgaagaatgctcaggaagcacat
gaagctatccggccgacggatttcagcaaggatcgctacggttcgggggacgaggcgcgg
ctctatgacctgatctacaagcgcgcgatggccagccagatggcctcggcaaatatcgag
cgcaccagcgtgacgctgcgcgatggcactggcaagcacgagctgcgggcgaccgggcag
gtggtgaagttccccggcttcctcgccgtctatgaggaagggcgcgaccagaaggccgat
ggcgacgacgaggacggcagcctgctgcccgcgctgagcaagggcgatacgcctgccaag
cgcggggtcgacgccacgcagcacttcacccagccgccgccgcgctattccgaagcgagc
ctggtcaaacgccttgaggaactgggcatcgggcggccttcgacatatgcggcaacgctg
caggtgctgaaagatcgcaactacgttcggacggagaaaaaccgtttctttgcagaagag
tccgggcgactcctgacatcgtttcttgagcggttctttacccgttatgtggcctacgag
ttcactgcaggcatggaagaggagcttgacgatgtgtcgggcgggcgtgccgagtggaag
aaggtgcttgccgagttctggcgcgacttcaagcccaagtccgacgaggtgatggagaag
aagccgagcgaggtgaccgccgagcttgacgaattcctgtccgactacctcttcccgccg
cgcgaagacggcagcgatccccgtttgtgccccaagtgcgaggcgggacgcctttcgctg
cgcggtggccgttacggggcttttgtcgcctgctcgaactatccggaatgcaagtatacc
cgcaagttcgcccagcccggcggagctgacggcgatggcggcggggacggcgtgctgggc
aaggacccggaaagcgggctcgaagttgtgcgcaaggctggccgctttggtccctacatc
cagttgggcgaaggcaaggaggccaagcgtgcgtcgatccccaaggatatcggcgaactc
gatcttgagtgggcgctgaagctgctttccctgccgcgcgaggttggcatgcatcccgaa
accggcaagccgatcaccgccagcatcggtcgttacgggccttacctggcgcatgagggc
aagtacgcgcgccttaaatcgaccagcgaggtgttcgaaaccggcatgaacgctgccgtg
atgcaccttgccgccgcagcggcaggcgctggcgctcgtggcggcaggacagcagcggaa
ccgctcaaggttttcgggccgcacccgacgtcagggggcgaaatcaagctcatggctggg
cggtatgggccttacgtgacagacggaaccaccaacgcgaccctgcccaaggacaagcag
cccgaagccctgacgctggaagaagcgatcaccctgatcgacgagcgggcggccaagggt
ccggccaagggaaagaagggcgcgaagaaggctccggccaagaaagctccggcaaagaaa
gcggcaccaaagaaggaagcggccgagaagccagcagccaagaagccggcggcaaagaaa
gcaccggcaaagaaggctgcgaagagcgccgagtaa
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