Novosphingobium sp. THN1: C7W88_12705
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Entry
C7W88_12705 CDS
T05635
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
not
Novosphingobium sp. THN1
Pathway
not03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
not00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C7W88_12705 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
not03400
]
C7W88_12705 (mfd)
Enzymes [BR:
not01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7W88_12705 (mfd)
DNA repair and recombination proteins [BR:
not03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C7W88_12705 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
UB2H
AAA_16
RecG_dom3_C
Cas3-like_C_2
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXU19686
LinkDB
All DBs
Position
complement(2587778..2591272)
Genome browser
AA seq
1164 aa
AA seq
DB search
MSDLTRILSANTPLTLSSVARGAQPLVLADLARAAKGRAVFIAPDEAAMRAIVESAAFFA
PDLEVIDFPAWDCLPFDRASPALSVSSRRLAALQRLQRKRSGPQLLVTTINAALQRVLTP
FRIRESTRLLAPGTEIGRESLIALLQRQGYSRTDTVVDAGEYAVRGSVFDIYPSGLDHGL
RLDFFGDELETLRLFDPNTQRSVQPVETHLLLPASEALLDDESIKRFRSRYRELFGANAT
GDPLYQAITDGRRLAGMEHWLPLFEDRLVTLFDHLAEGDLVLIDTTAIKAAEQRIADIAD
YHQSRLDSSSKAPGSYRPLAETALYLSRDELDRALAGWPVHRTTIFAEPESKQVVDFGFS
SAHDFTPERAAATSGGTNIYEAAAKYIAALGTRGKKPIIAAYTAGSRSRLASLLAEAGKF
TPQMADSWQEALGLAATGKPAAVVLPLEQGFASDDLELLTEQDILGDRLVRRKKKRKDAD
AFLAELSALTPGDLVVHMDHGIGRYLGLEAIGVGDSPHDCVQLEYSGGDKLYIPVENLDV
LSRYGSDAEGVALDKLGGEAWQRRKARMRERILEMAGHLMATAAQRALRQGTVLPVDPAS
YGPFVDRFPWDETEDQERAIGDVLGDMAEGKPMDRLVCGDVGFGKTEVALRAAFVAAMQG
VQVAVIAPTTLLARQHYSNFVERFKGFPLEIGRLSRLVPAKEASETKAGLASGQVDIVIG
THALLSKSVEFKRLGLVIVDEEQRFGVTHKEKLKELKADVHVLTLTATPIPRTLQMAMSG
LRELSTIQTPPVDRLAVRTYVMPWDDMVMREALLREHQRGGQSFIVVPRIADMPELEEWL
RLNVPEVRFVTAHGQMSPTEVEDRMGAFYEKKYEVLLSTTIVESGIDIPSANTIVIHRAD
RFGLAQLYQLRGRVGRGKIRAYAYLTVPEDMALSEVAEKRLKVLGDLDSLGAGFQLASHD
LDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAILAAKAGDIGLAREREALSPQITLDAP
IMIPEDYVPDLAVRMALYRRMNDAEGPDAVEALAAEMIDRFGPLPAPTQNLLRLIEVKRQ
AIAANIAKIDVGPKGALVSFHKDTFPDPVGLIGYVERLNGVAKLRPDNKLVITRAWGTAE
GRLNGLVQMTKGLAAIVKRAKKAA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctgacccgcatcctctcggccaatacgccgctcacgctctcgtccgtcgcg
cgtggtgcgcagcccctcgttctggccgatcttgcccgcgccgccaaaggccgcgccgtt
ttcatcgcgcccgacgaggccgcgatgcgcgccattgttgaaagcgccgcattctttgcg
ccggacctcgaggtcattgactttccggcatgggactgcctgccgtttgaccgtgcctcc
ccggcgctgtctgtcagttcccgccgcctcgccgcgctacagcggctgcaacgcaagcgc
agcggtccgcaactgcttgtcacgacgatcaacgctgcgctccagcgtgtcctcacgccg
ttccgcatccgagaatccacccgcctccttgcaccgggcaccgaaatcggccgcgagagc
ctgatcgcactcctccagcgccagggctattcgcgcaccgatacggtggtcgacgcgggc
gaatacgccgtgcgcggctcggtcttcgatatctacccttcggggctcgatcatggcctc
cgtctggacttcttcggcgacgagcttgaaaccctgcgcctgttcgatccgaacacgcag
cgctcggtgcagccggtcgaaacgcatctcctgctgccggcgagcgaagccctgctcgac
gacgagagcatcaagcgcttccgcagccgctaccgcgaactgttcggcgccaacgccacc
ggcgatccgctctatcaggctatcaccgacggccgtcgcctcgccggcatggagcactgg
ctcccgctgttcgaggaccgtctggtcacgctgttcgaccacttggccgagggcgacctc
gtcctgatcgacacgaccgcgatcaaggctgccgaacaacgcattgccgacattgccgac
tatcatcagtcgcgcctcgattcctcgtccaaggctcccggcagctaccgccctctggca
gaaaccgcgctatatctttcgcgtgatgagctggaccgggcgcttgccggttggcccgtg
caccgcaccacgatctttgccgaaccggaatcgaagcaggttgtcgatttcggcttcagc
tctgcccacgatttcacgccggaacgcgctgccgccacttcaggcggcaccaacatctac
gaagcggccgccaagtacattgcggcgctgggcacgcgcggcaagaagccgatcatcgcg
gcctataccgccggctcccgctcgcgcctcgcctcgctactggccgaagccggcaagttc
acgccgcagatggccgattcctggcaggaagcgctcggccttgccgccacgggcaagcct
gctgccgtggtcctgccgctggagcagggttttgccagcgacgatctggaactgctgacc
gagcaggacatccttggcgaccgtctcgtccgccgcaagaagaagcgcaaggacgccgac
gcgttcctggccgaattgtccgcgcttacgccgggcgacctcgttgtccacatggaccac
ggcatcggtcgctacctcggcctcgaagccatcggcgtcggcgacagcccgcacgattgc
gtccagctcgaatactccggcggcgacaagctctatatcccggtcgaaaacctcgacgtc
ctctcgcgctatggctccgatgccgaaggcgtcgcgctcgacaagctaggcggtgaggcg
tggcagcgtcgcaaggcccggatgcgggaacgcatccttgaaatggcgggccacctcatg
gccactgccgcccagcgcgccctgcgccaaggcacggtgcttcccgtcgaccccgccagc
tacggccccttcgtcgatcgcttcccatgggacgaaaccgaggatcaggaacgcgcaatc
ggcgatgtcctcggcgacatggccgaaggcaagccgatggaccgcctcgtctgcggcgac
gtcggcttcgggaagaccgaggttgccctgcgcgcggcattcgtcgcggccatgcagggc
gtgcaggttgcggtcatcgcgccgacgaccctgctcgcacgccagcactattcgaacttc
gtcgagcggttcaaaggcttcccgctggaaatcggtcgcctttcgcgcctcgtccccgcc
aaggaggcaagcgagaccaaggccgggcttgccagcggacaggtcgacatcgtcatcggc
acccatgcgctcctgtccaagtcggtggagttcaagcgtcttggccttgtcatcgttgac
gaggaacagcgcttcggcgtcacccacaaggaaaagctcaaggaactgaaggcggacgtt
cacgtccttaccctcaccgccacgccaatcccgcgcacgctgcagatggccatgtcaggc
ctgcgcgagctgtccactatccagaccccgccggtcgaccgccttgccgtgcgtacctat
gtcatgccgtgggacgacatggtcatgcgcgaagccttgctgcgcgaacaccagcgcggc
ggacaaagcttcatcgtcgtgccgcgcattgccgatatgccagagctcgaggaatggctg
cggctaaacgtgcccgaggtccgcttcgtcaccgcgcacggccagatgagcccgaccgaa
gtcgaggaccggatgggcgcgttctacgagaagaaatacgaggtcctgctatcgaccacg
atcgtcgagagcggcatcgacattccctcggccaataccatcgtcatccaccgtgccgac
cgtttcggcctcgcccagctctaccagctgcgcggacgcgtcggtcgcggcaagatccgt
gcttacgcctatctcaccgtgccagaggacatggcgctgtccgaagtcgctgaaaagcgc
ctcaaggtccttggcgacctcgacagcctcggcgccggcttccagctcgccagccacgac
ctcgacattcgcggcgccggcaacctgttgggcgacgaacagtctggccacatcaaggaa
gtcggcttcgaactttatcagtcgatgctcgaggatgcgatccttgccgccaaggctggc
gacatcggccttgcccgcgaacgcgaggcgctgagcccgcagatcacgctcgacgcgccg
atcatgatcccggaggattacgtccccgaccttgccgtgcgcatggccctgtaccgccgc
atgaacgacgccgaaggaccggatgcggtcgaggccctcgccgccgaaatgatcgaccgc
ttcggccccctgcccgccccgacgcagaacctgctgcgcctgatcgaggtcaagcgccag
gccatcgccgccaacatcgccaagatcgacgtcggacccaagggcgcgctggtcagcttc
cacaaggataccttccccgacccggtcggcctgatcggctatgtcgagcggctcaatggc
gttgccaagctgcgtcccgacaacaagctggtcatcacccgcgcatggggcaccgcagaa
ggtcggctcaacggtctggtgcagatgaccaagggtctggctgcgatcgtgaagcgggcc
aagaaggcggcctaa
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