Novosphingobium sp. THN1: C7W88_14400
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Entry
C7W88_14400 CDS
T05635
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
not
Novosphingobium sp. THN1
Pathway
not03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
not00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7W88_14400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
not03019
]
C7W88_14400
Messenger RNA biogenesis [BR:
not03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7W88_14400
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
RNase_J_C
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AXU19952
LinkDB
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Position
complement(2900444..2902096)
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AA seq
550 aa
AA seq
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MKPAKELLFLALGGSGEIGMNVNLYCCDGKWLMVDLGMTFADPYYPGIDLVFADLDFIEQ
RLDDLVGIVLTHAHEDHIGAVPYFAQDLGVPLYATPFTAKLVHEKLVEAGIEDEVELNVI
DHLDRFELGPFGVRYVPLAHSIAEGNALLIDTPHGRIFHTGDWKLDDEPRIGTPATEEEL
TAIGDEGVLALVCDSTNVFNPKPSGSEGEVRAGLLEAVGAQKGRRVVVTTFASNVARLQT
LGEVAEATNRKLCVAGRSLDRIIRVAQSCGYLKNFPDLVHMDDAMDVPRGELLVLATGGQ
GEPRAALARIAGDQHPVRLEKGDVVLFSSRQIPGNELAIGRIQNALVEKGVRIVTDRQSM
IHVSGHPGRPELVALYNWIRPEILVPVHGEIRHMAEQAQLGLDEGIPKTILQKNGDLIRL
APDGPKKLSEERSGRLVLDGDIIAPADGEGVVARRKLSQNGLITAALAVRHDGQVVSDVE
IASIGIPLDEDMEAFVAEAKVEAAQAVRNLKGDRKRDRVAVAETVRLAVRRTGQRWSGKK
PVVQVLLRES
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcctgccaaggaactccttttcctcgcgctcggcggatcgggcgagatcgggatg
aacgtcaacctctattgctgtgacggcaagtggctgatggtcgacctcggcatgactttc
gccgacccctattatcccgggatcgatctggtatttgccgacctcgatttcatcgagcag
cggctcgatgacctggtgggtatcgtgctgacgcacgcgcacgaagaccatattggcgcc
gtgccgtactttgcgcaggacctcggcgtgccgctttatgcgacgcctttcacggccaag
ctggtccatgagaagctggtcgaagctgggatcgaggacgaggtcgaactcaacgtcata
gaccatctcgacaggttcgaactcggcccctttggcgttcgctacgtgccgctggcgcac
tcgattgctgaaggcaatgcgctgctgatcgacacgccgcatggccgtatcttccatacc
ggcgactggaagctggacgacgagccgcgcatcggtactccggcgaccgaagaagagttg
accgccatcggtgatgagggcgttctggcgctggtctgcgattccactaacgtgttcaat
cccaagccatccggttcggaaggtgaagtgcgggcagggctgctcgaagctgttggtgcg
cagaaggggcgccgtgttgtcgtaaccaccttcgcttccaacgtggcgcgtctgcagacg
ctgggcgaagtggcggaagcgaccaatcgcaagctgtgcgttgcagggcggtcgctcgat
cggatcatccgcgtcgcgcagtcctgcggttatctcaagaacttccctgacctcgtccac
atggatgatgccatggacgtgccgcgcggcgaactgctggtgctggcgacaggtgggcag
ggtgagccgcgcgctgctctggcacgcattgccggcgatcagcacccggtacggctcgag
aagggcgacgtggtgctattctccagccgccagatcccaggaaacgaactcgccatcggg
cgcatccagaatgctctggtggagaaaggcgtgcggatcgtgaccgacaggcagtcgatg
attcatgtctccggccatcctggtcgccctgaactggtggcgttgtataactggatccgg
ccggagatccttgtgccggtccatggcgagatccgccacatggccgagcaggcgcagctt
gggctggatgaagggattcccaaaacgatcctgcagaagaacggcgatctgatccggctt
gcaccggatggtccaaagaaactgtctgaagaacgctccgggcggctggtgcttgacggc
gacattatcgctcccgccgatggcgagggcgtagtcgcgcggcgcaagctttcgcagaac
gggctgatcacggcggcgctggcagtgcggcacgatgggcaggtagtttccgatgtcgag
attgcctcgatcggcatcccgctggacgaggacatggaggccttcgtggccgaggccaag
gtcgaggcggcgcaggccgtgcgcaatctcaagggcgatcgcaagcgtgatcgagtggcc
gtggcggagaccgtgaggctggcggtgcgccgcaccgggcaacgctggtcgggcaagaag
ccggtcgtgcaagtgctcctgcgggaaagctga
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