Novosphingobium sp. THN1: C7W88_15300
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Entry
C7W88_15300 CDS
T05635
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
not
Novosphingobium sp. THN1
Pathway
not03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
not00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7W88_15300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
not03019
]
C7W88_15300
03009 Ribosome biogenesis [BR:
not03009
]
C7W88_15300
Enzymes [BR:
not01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C7W88_15300
Messenger RNA biogenesis [BR:
not03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7W88_15300
Ribosome biogenesis [BR:
not03009
]
Prokaryotic type
rRNA helicases
C7W88_15300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AXU20740
LinkDB
All DBs
Position
3112433..3114205
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AA seq
590 aa
AA seq
DB search
MTFAHLPSPLAQALEAHGYTALTPVQAAVTEPEAAGRDLVVSAQTGSGKTVAFGLAMAPE
LIGDESALPFATAPLALVVAPTRELALQVSRELQWLYAPTHARIATCVGGMDPSRERRTL
QGGAHIVVGTPGRLRDHLERGALDLSALACVVLDEADEMLDMGFREDLEELLDATPENRR
TLLFSATMPKPIEALARRYQKNSLRISTVGENRGHGDIAYRAVAVAPAEIEAAVVNLLRF
HEAETAMLFCATRDNVRRLHATLVERGFTAVALSGEHSQSERNNALQALRDRRARVCVAT
DVAARGIDLPSLSLVVHVEIPRDAETLQHRSGRTGRAGKKGTAVLIVPFPRRRRVEMMLR
GAKINAEWAEVPTPEAIRAQDRERLLETILAPVEPDEADLDIARTLLEQRSAEELAAALV
RAHRAALPQPEELLSGSDEGRKQAAHRPGFDDVVWFRMDVGRRQNADPRWILPTLCRRGH
VSRQEIGAIRIAPNDTWFQVPRAIADRFADAVRRTADPKGEDENGIHIEAAPDGPREMAR
DNRRGANDGPRKFHRNDGPRGEDHRGPRRPHPAGQRPQGRPHRKGPAQPR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgcacacctccccagcccgctcgcgcaggctctcgaagcgcatggctacacc
gcgctgaccccggtccaggctgccgtcaccgaacccgaagctgctggccgcgaccttgtc
gtgtcggcacagaccggctcgggcaagaccgtggccttcggccttgccatggcgcccgaa
ctgatcggcgatgaaagcgccctgccctttgccaccgcgcccctcgcactggtcgtggcg
ccgacgcgcgaactcgcgctgcaggtcagccgcgagttgcagtggctctatgcgccgacc
cacgcgcgcatcgccacctgcgtcggcggcatggacccttcgcgcgaacgccgcacgctg
cagggcggcgcccatatcgtcgtcggcacgcccggccgcctgcgtgaccacctcgaacgc
ggtgcgctcgacctctcggcgctcgcgtgcgtcgttctcgacgaggctgacgagatgctc
gacatgggcttccgtgaagacctcgaggaactgctcgacgcaacgcccgaaaaccgccgc
accctgctattctcggcgacgatgcccaaaccgatcgaggctctggcaaggcgctatcag
aagaactcgctgcgcatctccacggttggcgaaaatcgcggccatggcgatattgcctac
cgcgccgttgccgttgccccggcagaaatcgaagccgcagtagtcaacctgctgcgcttc
cacgaagcggaaaccgcgatgctgttctgcgccacgcgcgacaatgtccgccgcctccac
gccacgctggtcgaacgcggcttcaccgccgtcgcgctttcgggcgagcatagccagtcg
gagcgcaacaacgcgttgcaggccctgcgcgatcgccgtgcccgcgtctgcgtggctacc
gacgtcgcagcgcgcggcatcgaccttcccagcctgagcctcgtcgtccacgtggaaatc
ccgcgcgatgccgaaacgctgcagcaccgctccggccgcaccggccgcgccggcaagaag
ggcaccgccgtgctgatcgtgccgttcccgcgccgccgccgcgtcgagatgatgctgcgc
ggagccaagatcaacgccgagtgggccgaagtgccgacgccggaagcgatccgcgcgcag
gaccgcgaacgcctgctcgaaacgattctcgcgccggtcgagccggacgaggccgatctc
gacattgcccgcaccctgcttgagcagcgcagcgccgaggaactggccgcagcgctggtc
cgcgcccatcgcgccgcgctgccccagcccgaagagctgctctctggctccgacgaaggc
cgcaagcaggctgcgcaccgccccggctttgacgatgtggtgtggttccgcatggacgtg
ggtcgccgccagaacgccgatccgcgctggatcctgccgacgctgtgccgccgcggccac
gtctcgcgccaggaaatcggcgcgatccgcattgctcccaacgacacctggttccaggtc
ccgcgcgccattgccgaccgcttcgccgatgccgtgcgccgcaccgccgatcccaagggc
gaggacgagaacggaatccacatcgaggccgcacccgatggtccgcgcgaaatggcgcgc
gacaaccgccgcggcgccaacgatggcccgcgcaagttccaccgcaatgatggcccgcgc
ggcgaagaccatcgcggcccccgccgcccgcacccggcaggccagcgccctcagggaagg
ccgcaccgcaagggcccagcccagccacgctga
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