Novosphingobium sp. THN1: C7W88_17265
Help
Entry
C7W88_17265 CDS
T05635
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
not
Novosphingobium sp. THN1
Brite
KEGG Orthology (KO) [BR:
not00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
not03016
]
C7W88_17265
Enzymes [BR:
not01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C7W88_17265
Transfer RNA biogenesis [BR:
not03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C7W88_17265
Prokaryotic type
tRNA splicing ligases
C7W88_17265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AXU20797
LinkDB
All DBs
Position
pTHN:38825..40051
Genome browser
AA seq
408 aa
AA seq
DB search
MTSTTFEFQAVEGGVPIKMWTRGVPVDDKAREQLSRAAKMPFIFKHVAAMPDVHVGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTSLMAHDLPDNLEGIRSAIEHAVPHGRDVGRG
KRDKGSWGSPPPAIVEAWAILLQRFERICDKFPRLKNTNNLVHLGTLGTGNHFIELCLDQ
EARVWIMLHSGSRGVGNAIGSFFIELAKQDMRKWHINLPDENLAYFPEGTDHFDDYVEAV
GWAQDFAALNRRMMMTNVIAALRGQISKPFDAELEAVNCHHNYVTRENHFGENVLVTRKG
AVRAAKGVLGIIPGSMGAKSFIVRGLGNPESFDSCSHGAGRIMSRTEAKKLVTLDEHIRD
TEGVECRKDAGVIDETPKAYKPIEKVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtacgacttttgaattccaggccgtcgaaggcggcgtgccgatcaagatgtgg
acgcgcggcgttccggttgacgacaaggcgcgcgaacagctttcacgcgctgcgaagatg
cccttcatcttcaagcatgtcgctgcgatgcccgacgtccatgtggggatcggcgctacc
gtcggctcggtaatcccgaccaagggtgcggttattccggccgccgttggcgtggacatc
ggctgcggcatgatggccgcgcgcacctcgctgatggcgcacgatctgcccgacaacctc
gaaggcatccgctcggcgatcgagcatgcggtgccgcatgggcgtgatgtcgggcgcggc
aagcgcgacaagggttcgtggggttctccgcccccggcgattgtcgaggcttgggccatt
ctgttgcagcgcttcgagcggatctgcgacaagtttccgcggctgaagaacaccaacaac
ctggtgcacctcggcacgctgggaacgggcaaccacttcatcgagctgtgcctcgatcag
gaagcccgcgtctggatcatgctccattccggttcgcgcggggtgggcaacgcgatcggc
tcgttcttcatcgaactggcgaagcaggacatgcgcaagtggcacatcaacctgcccgac
gagaacctcgcctacttcccggaagggaccgaccatttcgacgactacgtcgaagcggtc
ggctgggcgcaggacttcgccgcgctgaaccgccgcatgatgatgaccaatgtcatcgcc
gcgctgcggggccagatctcgaagcctttcgatgccgagcttgaagcggtgaactgccat
cacaactacgtgacgcgcgagaaccacttcggcgagaacgtgctcgttacccgcaagggg
gcggtgcgcgcggccaagggcgtgctgggaatcatcccgggctcgatgggagcgaagagc
ttcatcgtgcgcgggctgggcaacccggagagctttgacagctgcagccacggcgcggga
cggatcatgtcgcgcaccgaggccaagaagctggtgacgctcgacgagcacatccgcgac
accgaaggcgttgaatgccgcaaggacgcgggcgtgatcgatgagacgcccaaggcctac
aagccgatcgaaaaggtgatggccgcacaggccgatctggtggagatcgtccataccttg
aagcaggtggtctgcgtgaaggggtga
DBGET
integrated database retrieval system
