Novosphingobium sp. THN1: C7W88_22250
Help
Entry
C7W88_22250 CDS
T05635
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
not
Novosphingobium sp. THN1
Pathway
not03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
not00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7W88_22250 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
not03019
]
C7W88_22250 (recQ)
03400 DNA repair and recombination proteins [BR:
not03400
]
C7W88_22250 (recQ)
Enzymes [BR:
not01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7W88_22250 (recQ)
Messenger RNA biogenesis [BR:
not03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7W88_22250 (recQ)
DNA repair and recombination proteins [BR:
not03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C7W88_22250 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXU21683
LinkDB
All DBs
Position
pTHN:complement(1141550..1143343)
Genome browser
AA seq
597 aa
AA seq
DB search
MAQTVFPQSEILDRLHAVFGFNAFRGVQADVVERVLAGRSTLAVMPTGAGKSLTYQLPAV
MLPGTCVVVSPLIALMHDQLRSASANGIRAATLTSVDLDRGQTIDRFLSGDLDLLYVAPE
RASQPHFLEMLTRGRVAMFAIDEAHCVSEWGHDFRPDYRLLRPLMDAFPDVPRLALTATA
DRHTRADILSQLGIPEEGLIVAGFDRPNIRYAITARDNPLRQLMTVIAENPGPGIVYAPT
RAQVEKLSQQLQASGRPVLPYHAGLDPQVRADNQARFVASEDMVMVATVAFGMGIDKPDV
RFVAHAACPKSIESYYQETGRAGRDGDPSVAVMLWGAEDFMRARQRLAEVEEHRRAGERT
RIDALASLVETPHCRRALLLRHFGENPPPSCGNCDNCLEAPRVTDATEVARKLLSAVYRT
GQSFGFGYVEKVLTGVADDRVTQRGHDQLSVFGIVTSDEAPLLRPLARALQARGALVATE
HGGLALGGDARAILKGEADVPLVLVPKKEGRSGRRRSGTGAALNPVGDPLFDALRNLRRD
LARENGVPPYVIFHDSVLREMAATRPGSLAELGQIGGVGSRKLDAYGDRFLKVIRQW
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atcgcccagaccgtattcccgcaatccgaaatcctcgaccgtctccacgccgtgttcggc
ttcaacgcctttcgcggcgtacaggcggacgtggtcgagcgcgtgctggcggggcgctcg
acccttgccgtcatgcccaccggcgcgggcaagtcgctgacctatcagctgcccgccgtc
atgctgccgggcacctgcgtcgtcgtctcgccgctgatcgccctgatgcatgaccagttg
cgcagcgcaagtgccaacggtatccgcgccgccacgctaaccagcgtcgacctggatcgg
ggccagaccatcgaccgtttcctgtcgggcgatctcgatctgctctacgttgcccccgaa
cgcgccagccagccgcatttcctcgaaatgctcacccgcggccgcgtcgccatgttcgcc
atcgacgaggcacactgcgtctccgagtggggccacgactttcgccccgattaccgcctc
ctgcgtccgctgatggacgctttcccggatgtgccgcgcctggcactgaccgccacggca
gaccgccacacccgcgccgatatcctatcccagcttggcatccccgaagagggcctgatt
gttgccgggtttgaccggcccaacatccgctacgccatcacggcgcgcgacaatcccttg
cgccagctgatgacggtcattgccgaaaaccccggtcccggcatcgtctatgcccccact
cgcgcgcaggtggaaaagctcagccagcagctgcaggccagcggccgtcccgtcctgccc
tatcacgccgggctcgatccgcaggtaagagcggacaaccaggcacgcttcgtcgcctcc
gaagacatggtcatggtcgccacggtcgccttcggcatgggtatcgacaagcccgacgtg
cgcttcgttgcccacgccgcatgcccgaaatcgatcgaaagctattaccaggaaaccggc
cgtgccgggcgcgatggcgatccttcggtggcagtcatgctgtggggcgcggaagatttc
atgcgcgcccgccagcgcctcgccgaagtcgaagagcaccgccgcgccggcgaacgcacc
cgcatcgatgcgctcgcgtccttggtcgaaaccccgcattgtcgccgcgccctgctgctg
cgccacttcggcgagaatccgccgccgtcgtgcggaaattgcgacaattgcctggaagcc
ccgcgcgtcaccgatgccaccgaggttgcccgcaagctgctctccgccgtctaccgcacc
ggacagtcgttcggcttcggctacgtcgagaaagtcctcacgggtgttgccgatgatcgc
gtgacccagcgcgggcacgaccagctttccgtgttcggcatcgttaccagcgatgaagcc
ccgctgctgcgccctctggcccgcgccctgcaggcaagaggcgcccttgtggccacggaa
cacggcggccttgccctaggcggcgatgcccgcgccatcctcaagggcgaagcggatgtg
cccctcgtcctcgtgccgaagaaggaaggccgctcaggtcgccgccgcagcggtacaggg
gctgcactgaaccctgtgggcgatcccctgttcgatgccctgcgcaacctgcgccgcgat
ctcgcacgcgagaacggcgtgccgccttacgtcatcttccacgattccgtcctgcgcgag
atggcggccacgcgcccgggcagcctcgccgaactcggccagatcggcggtgtcggctcg
cgcaagcttgatgcctatggcgatcgtttcctcaaagtgatccggcagtggtaa
DBGET
integrated database retrieval system
